Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0674 ATGTTCTTGTGTTGCGATTTTGAAGACGGGCAGACGGAGAAAAGAGTCAGCGATCTCCAAAAGGTTTTGCAGAGAAGCCAAAGCAGAAGACGCAGACAGAGACAGGAACCCCAAGAGAATCGTCAAAAGCAACATCTCGAGCAACAAAGCCATGTTCAAATGCTCCGTATAAATGGCTTTGTTGCTTCACTTGCTGCATTAAATAATGATAAGCGTGGTAGTGTTACTGAGGCTAATTCTGAGTCCATGAATCCGGGAGGAAATAAACTTGCAGAAATAATAACGAAAACCTCCGACATGGCCCCGCGCGCGCGCCGTCAACTCCTAACAAGCCGTGACCAGAAGAGGATGGCGAAATCAGTTACCTCAGACGCGATTTCGATATTGCTTGCCAACCCGTCTCCGGATTCCTCCTCGGAGCTTCCTGAAATCATTGTCCAAGTTCTGGATCTCAAGCAAAGCGGCAACAGATTCATGTTCACTGCTAACGATGGGAAGATGAAGTTAAGGGCGATCCTCCCTTCTAATCAGAATTCCCAAGTCATTTCGGGAAGTGTTCAGAACCTGGGTCTTATCCGCATAGTTGATTATACTCTCAATGATATCCCAAACAAGTCAGAGAAATATCTTATTGTTACAAAATGTGAATCGATCTCTCCTGCCCTTGAAATGGAGATAAAAACAGAAATCGAGAGTGAGGGCCCCGCTATGCTTTTGAATCCAAAGCAAGAGGGTGAAACCAAAAGCGATGTGAAAAGTGAAGCTGCTGGTATTATTTTGAGACCGAAGCAAGAAATGGCGTCCACGTCTGCCGCTCAGATTGTACACGAACAACATGCAAACACTGCCCCTACTGCACGGATGGCCATGACACGCAGGGTGCTCCCTCTTGTTTCCTTAAATCCTTATCAAGGTAATTGGACGATAAAGGCCCGTGTAACAAGCAAAGGGAACATGCGTTCCTACAAGAATGCTAGAGGGGAAGGTTGTGTCTTCAACGTGGAATTGACAGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAACGAGGCTGCCAGGAAATTTCATGACAGATTTGCGCATGGGAAGGTTTACTACATTTCCAAGGGAACTTTAAAGGTTGCTAACAAACTGTTCAAAACTGTCCAAAACGATTATGAGATGACGTTGAATGAGAATTCTGAGGTGGAAGAGGCAGCCAATGAAGAAAGTTTTGTTCCAGAAACAAAATTTAACTTTGTCCTGATTGATCAGCTGGGCCCTTTTGTCAACAGGGGCGACCTTGTTGATGTCGTAGGAGTTGTTCAGAATGTGTCTTCCACCATGAGCATTCGAAGGAAGAGTAACAATGAGAGTATTTCAAAGCGTGATATTACTATTGCTGATGAAACAAAGAAGACAGTGGTTGTGTCTTTGTGGAGTGAACTTGCAACTAATGTAGGGCAAGAATTGCTGGACAATGCTGATAAATCTCCAATAGTTGCAATCAAGTCTCTCAAAGTTGGGGATTTTCAAGGTGTTTCCTTGTCAACTATAAGCAGAAGTGTAGTTCAGATAAATCCTGATATTCCCGAAGCAAAAAAGCTTAGATGCTGGTATGAGTCTGAAGGTAAAGACGCTCCAATGGCTTCCATTGGCTCTGGTGCATCTGCAACAAAAAATGGAACGAGATCAGTGTACTCTGACCGTATTTCTCTAGCTCAAATAACCTCGAACAAATCCTTGGGAGATGACAAGCCTGCAACTTTCAGTATCAGGGCACATATAAGCTCCATTAGGCCTGATCAGACAATGTGGTATAGAGCTTGTACAACTTGCAACAAGAAAGCCACTGAAGCCATTGGGTCTGGCTATTGGTGTGAAGGCTGCCAGAAAAATGTTGAAAGCACTTTAAGGTATATTTTGGTTGCGAGAGTTTCTGATGCAAGTGGTGAAGCTTATGTCTCGATCTTCAATAATGAAGCTGAGGAGATTGTTGGGTGTTCTGCTAATGAGCTAGATAGCCTAAAATCACAGGAGGGAGAAGATAATCCATACCAAATGAAATTGAAACAAGCAACTTGGACCCCTCATCTATTCCGTGTTAGTGTTTCTCAGAATGAGTATATGAACGAAAAGAGGCAGAGGATAACTGTCCGAGCGGTTGCTCCAGTTGATTATGCTGCTGAGTCAAGAATTCTGCTGGAAGAGATTTCAAAGATGACAGCTTCACAATAA 2220 0.4347 MFLCCDFEDGQTEKRVSDLQKVLQRSQSRRRRQRQEPQENRQKQHLEQQSHVQMLRINGFVASLAALNNDKRGSVTEANSESMNPGGNKLAEIITKTSDMAPRARRQLLTSRDQKRMAKSVTSDAISILLANPSPDSSSELPEIIVQVLDLKQSGNRFMFTANDGKMKLRAILPSNQNSQVISGSVQNLGLIRIVDYTLNDIPNKSEKYLIVTKCESISPALEMEIKTEIESEGPAMLLNPKQEGETKSDVKSEAAGIILRPKQEMASTSAAQIVHEQHANTAPTARMAMTRRVLPLVSLNPYQGNWTIKARVTSKGNMRSYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFHDRFAHGKVYYISKGTLKVANKLFKTVQNDYEMTLNENSEVEEAANEESFVPETKFNFVLIDQLGPFVNRGDLVDVVGVVQNVSSTMSIRRKSNNESISKRDITIADETKKTVVVSLWSELATNVGQELLDNADKSPIVAIKSLKVGDFQGVSLSTISRSVVQINPDIPEAKKLRCWYESEGKDAPMASIGSGASATKNGTRSVYSDRISLAQITSNKSLGDDKPATFSIRAHISSIRPDQTMWYRACTTCNKKATEAIGSGYWCEGCQKNVESTLRYILVARVSDASGEAYVSIFNNEAEEIVGCSANELDSLKSQEGEDNPYQMKLKQATWTPHLFRVSVSQNEYMNEKRQRITVRAVAPVDYAAESRILLEEISKMTASQ 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0674 739 FunFam Replication protein A subunit 120 230 - -
Lele19g0674 739 Pfam Replication factor-A protein 1, N-terminal domain 121 218 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele19g0674 739 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 119 734 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele19g0674 739 Gene3D - 407 546 IPR012340 -
Lele19g0674 739 MobiDBLite consensus disorder prediction 24 48 - -
Lele19g0674 739 Gene3D - 547 735 IPR012340 -
Lele19g0674 739 MobiDBLite consensus disorder prediction 29 46 - -
Lele19g0674 739 FunFam Replication protein A subunit 293 402 - -
Lele19g0674 739 Gene3D - 120 228 IPR012340 -
Lele19g0674 739 SUPERFAMILY Nucleic acid-binding proteins 295 403 IPR012340 -
Lele19g0674 739 FunFam Replication protein A subunit 549 735 - -
Lele19g0674 739 PANTHER REPLICATION FACTOR A 1, RFA1 307 698 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele19g0674 739 CDD RPA1_DBD_A 296 399 - -
Lele19g0674 739 Coils Coil 16 36 - -
Lele19g0674 739 Pfam Replication factor-A C terminal domain 584 727 IPR013955 -
Lele19g0674 739 Pfam OB-fold nucleic acid binding domain 307 393 IPR004365 GO:0003676
Lele19g0674 739 SUPERFAMILY Nucleic acid-binding proteins 117 224 IPR012340 -
Lele19g0674 739 Gene3D - 293 402 IPR012340 -
Lele19g0674 739 SUPERFAMILY Nucleic acid-binding proteins 412 540 IPR012340 -
Lele19g0674 739 FunFam Replication protein A subunit 406 545 - -
Lele19g0674 739 Pfam Replication protein A OB domain 424 521 IPR031657 -
Lele19g0674 739 CDD RPA1_DBD_B 440 535 - -
Lele19g0674 739 SUPERFAMILY Nucleic acid-binding proteins 562 735 IPR012340 -
Lele19g0674 739 CDD RPA1_DBD_C 567 734 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0674 Lele-ChrLele19 3883485 3888231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0674 117 739 Core DNA Replication Machinery Family AT5G08020 65.974 0.0 872