Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0654 ATGCTAAGTAGGGACGTTGGTCATTGGGGTGGTTTGAATTCTCTTGTTGAGTCCTCTGATAACAATTCTGCATATTTCGAAGCTCGATCTTATGTGGTTCGAACTCCTCTGAGCAGCAAAATTGAAACGGGCAAAGTAAAACTGACTATTGGCAGTAACTCAGATTCTGCGAATTTGAACAAGAAAGGGAAGAAACCTGAGAGTTTAGCCATCAAAACGATCAAAACAACAGTTTCCATTAATGGGTTGGTCAATAACTGTAAAGAAAAGAAGCTTCATCGTGAGCTTGATAACCAGTCGACATTGGAGGATTCTGAAGACGAAGGAGAGTGGAAAAGCGAAGCCAATGGAACAGAACTAGATTCATCAGTAAAGAGAAGGTTCTCAGAATCTGAGGTGAAATCATCAAATAATTGCAAGAAAGGGAAGTTCAAGTGTACTACTTGCAACAAGATCTTCCCTTCGTACCAAGCTCTGGGAGGCCATAGATCTAGTCATAAGAAGCTCAAAGGCTGCTCTGCTTCGAGAAACGAGAGCAGCGAAAACAGCATAGAAACAGACCTCAACAATGGCTATGTAATCGAGAAACAAGAGCTAATTACTGGTTCTGTTAATTTTGAGAACGAGGAAGAGATAATCACAGAACCCAATAAGAAGAACAAAGTACACGAGTGTCCAATTTGCCTCAAGATTTTTCCATCCGGGCAAGCTTTGGGTGGTCACAAGAGATCTCATTTCACTTCTGAAGTACTTGAGAAACCAGTTCAGGAAATCAGAGACTTCCTTGATCTCAATCTTCCAGCTTCGGCAGAAGAAGAAAGCAACAGTCAAGTAATGGAGAATTACCCACCACCATGGTGGGTGAGCAAGCGAGAGGCAGCATTGGTTGGCCTCATATCTAACTGA 906 0.4216 MLSRDVGHWGGLNSLVESSDNNSAYFEARSYVVRTPLSSKIETGKVKLTIGSNSDSANLNKKGKKPESLAIKTIKTTVSINGLVNNCKEKKLHRELDNQSTLEDSEDEGEWKSEANGTELDSSVKRRFSESEVKSSNNCKKGKFKCTTCNKIFPSYQALGGHRSSHKKLKGCSASRNESSENSIETDLNNGYVIEKQELITGSVNFENEEEIITEPNKKNKVHECPICLKIFPSGQALGGHKRSHFTSEVLEKPVQEIRDFLDLNLPASAEEESNSQVMENYPPPWWVSKREAALVGLISN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0654 301 Pfam C2H2-type zinc finger 222 245 - -
Lele19g0654 301 Pfam C2H2-type zinc finger 144 168 - -
Lele19g0654 301 MobiDBLite consensus disorder prediction 96 123 - -
Lele19g0654 301 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Lele19g0654 301 Gene3D Classic Zinc Finger 141 245 - -
Lele19g0654 301 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Lele19g0654 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Lele19g0654 301 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 276 - -
Lele19g0654 301 SMART c2h2final6 144 166 IPR013087 -
Lele19g0654 301 SMART c2h2final6 223 245 IPR013087 -
Lele19g0654 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 250 IPR013087 -
Lele19g0654 301 SUPERFAMILY beta-beta-alpha zinc fingers 144 245 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0654 Lele-ChrLele19 3757243 3758148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0654 141 280 C2H2 Transcription Factor Family AT3G60580 39.456 7.21e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele19g0654 zf-C2H2_6 3.6e-11 CL0361