Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0653 ATGCACTCTCCGTCTCATACTCCCATCTTCTCTCAGCAACCCTATCCTTCAGAATCATTCTTCTTAACGTTTCCTCAACCAACGATTCCCTTCGTGCCATCGGATTCCTCTCTTCATTCTCCTGGATCCGACCCGCTAGGAAGTTCGGCCTTATACGCGTTGTTCCGCTCTGCTTATGGGCACCAATCAATTAATGCTCTGGACACAAATGCGGATACTCTGAACTGGATCGTCAAACAAGTTCGATCCATAAGATATGAAGCTGCTGCCAAATCTTCTCTTGGGACTTCAGCTGTGTCCGCAAGTTTTCCTTCTGCTTGGAATGACACCTTGGTGCGTCAACTTTTGCCTAATCTTACCCCAGTAATGTTGCCCCTGCCAAACCAAACCAAAGCTAATGAACTAATGCGATGTGAGGTTTGCAAAATTGATTGCACTAGCAAAGACGTTTTTGAAAAGCACCTATCAGGAGAGAAGCACATGAAGAATATGCGGTTGCTAAATAACCCCACCAATGCAATAATACCAGGAGCCTCTCATGCAAGTTTACAAAGTCAAATAAGTAGGGTCCGAGGACAAGATTTATTTGGTGTAGTGAGCAAAGAGTTAGAGTCTAAGAAACAGAAGCTTGTGAGTGGCGGTGCAGCAGTTGATTCAGTAAGGGTTTGCACGATATGTAATGTCGCCTGCAATAGTCAAGGTGTATACAACAAACATCTATCTGGGAAAAAGCATGCTGCTCAGATTAGGTTGATGTCTGGTAATGGGATTGATCCTTATCTTACCGGGTTTAACCGTCATAGCAGTGGTCGTTGGAAAAAAGTCCCAAAGAAAATTAAGTTTACCCAACCTTCATGGTGTGAACTTTGCAAGATCAGTTGTAACAGCAGGGATGCATATATGACACACTTAGCTGGGAAGAAACACCTGAGGAGCCTGGAGTTGCTGTCAAAATCAAATAATCCTGTTATTGGGCCCCAGGAAAAGCCAAACATTTGTAAAGATGAAGGGATAAGTTCACATAAACCAAATAAACCAGCCATGGTAGAGGATATTGAGGCAAAGAAACGTAAACTTGTGAAAGGTGGGGCAGCAGAAACTGATATTAGAATATGCCCTCTATGTAACGTGGTGTGCAACAGTCAAACGGTGTTTTATTTTCACCTTACTGGGCAGAAACATGCCGCGACAATGCTAGTAGTACTACATGAGAAGTCATTATCAGAGGCTGGCATAAAAGATAAGAAACACATACAGAGGTTGGAAGAAGAGCTGTTGAACTGCTCTCAAGAAATAGATTACCTTAAGGATCAGCTTAATGGAAGGAACATAGAGGAAGCCCAAAAAACTATTGTGTCTCTAAATGAGGAAAATAGGAAACTTAAGAATAAGATTGTTGCCGTCAACATGAACTCTAACAATTTTTCTCAGAAGGTTGAAGAGTGGCTAGAAAACAAGGACAGATCACAACCCAATGGTCAGTCTTCCTTTAGCGAACAAGAGAAGGAGTCAGACATATCAAAGAATATAAGGTTCAGAGTGAAATTGGCAATTTCTCTTCTTCAAGGGAATAACACCAAATGGGAAGAATTAAGAGAAGAAAAGTTGAAGGCCAAAGAAGAAGCAGAGGACCTTGCTCAATACATGGCAGAGCTTAGATATCAAGTTACAGATGAACTGAAAGATGTAGGTTCTCTTCTCATGTCTTGGTTCATAGAAAAGAACAACGAAGTGGTTGTACAGAAGAATCGCCTCTTGCGTGTTACAGGGCATTTTGTCTGGAATGCAAGAACTGATTTGAACATGAACTATTGTACAGAACTACAGATGCCTCAGAGCTTGCTTTCATTTTCTCTCTCTTCTTTCTAG 1869 0.4173 MHSPSHTPIFSQQPYPSESFFLTFPQPTIPFVPSDSSLHSPGSDPLGSSALYALFRSAYGHQSINALDTNADTLNWIVKQVRSIRYEAAAKSSLGTSAVSASFPSAWNDTLVRQLLPNLTPVMLPLPNQTKANELMRCEVCKIDCTSKDVFEKHLSGEKHMKNMRLLNNPTNAIIPGASHASLQSQISRVRGQDLFGVVSKELESKKQKLVSGGAAVDSVRVCTICNVACNSQGVYNKHLSGKKHAAQIRLMSGNGIDPYLTGFNRHSSGRWKKVPKKIKFTQPSWCELCKISCNSRDAYMTHLAGKKHLRSLELLSKSNNPVIGPQEKPNICKDEGISSHKPNKPAMVEDIEAKKRKLVKGGAAETDIRICPLCNVVCNSQTVFYFHLTGQKHAATMLVVLHEKSLSEAGIKDKKHIQRLEEELLNCSQEIDYLKDQLNGRNIEEAQKTIVSLNEENRKLKNKIVAVNMNSNNFSQKVEEWLENKDRSQPNGQSSFSEQEKESDISKNIRFRVKLAISLLQGNNTKWEELREEKLKAKEEAEDLAQYMAELRYQVTDELKDVGSLLMSWFIEKNNEVVVQKNRLLRVTGHFVWNARTDLNMNYCTELQMPQSLLSFSLSSF 622
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0653 622 SUPERFAMILY beta-beta-alpha zinc fingers 128 167 IPR036236 -
Lele19g0653 622 SUPERFAMILY beta-beta-alpha zinc fingers 367 397 IPR036236 -
Lele19g0653 622 Coils Coil 418 438 - -
Lele19g0653 622 SMART c2h2final6 285 309 IPR013087 -
Lele19g0653 622 SMART c2h2final6 136 160 IPR013087 -
Lele19g0653 622 SMART c2h2final6 221 245 IPR013087 -
Lele19g0653 622 SMART c2h2final6 370 394 IPR013087 -
Lele19g0653 622 Coils Coil 525 551 - -
Lele19g0653 622 SUPERFAMILY beta-beta-alpha zinc fingers 216 252 IPR036236 -
Lele19g0653 622 SMART ZnF_U1_5 218 252 IPR003604 GO:0003676|GO:0008270
Lele19g0653 622 SMART ZnF_U1_5 133 167 IPR003604 GO:0003676|GO:0008270
Lele19g0653 622 SMART ZnF_U1_5 282 316 IPR003604 GO:0003676|GO:0008270
Lele19g0653 622 SMART ZnF_U1_5 367 401 IPR003604 GO:0003676|GO:0008270
Lele19g0653 622 Pfam Zinc-finger of C2H2 type 372 394 - -
Lele19g0653 622 Pfam Zinc-finger of C2H2 type 286 309 - -
Lele19g0653 622 Pfam Zinc-finger of C2H2 type 138 160 - -
Lele19g0653 622 Pfam Zinc-finger of C2H2 type 223 245 - -
Lele19g0653 622 SUPERFAMILY beta-beta-alpha zinc fingers 283 316 IPR036236 -
Lele19g0653 622 Coils Coil 444 471 - -
Lele19g0653 622 PANTHER ZINC FINGER RNA-BINDING PROTEIN 198 329 - -
Lele19g0653 622 Gene3D Classic Zinc Finger 198 252 - -
Lele19g0653 622 Gene3D Classic Zinc Finger 273 315 - -
Lele19g0653 622 Gene3D Classic Zinc Finger 126 167 - -
Lele19g0653 622 Gene3D Classic Zinc Finger 353 399 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele19g0653 Lele-ChrLele19 3746982 3753527 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0653 202 540 C2H2 Transcription Factor Family AT5G61190 24.603 2.57e-10 61.6