Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0646 ATGATGGAGGAAAATAGGCTCAAGCAAAGAAGAGTGTCATTATCTGATCCACCGTCACAGCCAATTGTTGAGGATGAGGCTGTAATTAGAGATGACAAGCATGGAATTGCAGTTGCAGCTGCAACATTAGCCATTTACTCGATAGAACAAGCAGAGTTGCTTAATTTGCAGAAGATGAAAGAAGGTCCTGTATCTTCTTCAAGTACTCAGACTATGAGAAGAAAAGAAGAAAGCATATCTAGGAAGGCAAGTTATGCTTTTAGAAACTGTTATGGAGGATTGACATTTATAGGAGGAATAACAATAACAAGCTTTATTTTACTAGGTGTTATGGGTTACAAGGATTGCACAATTCCATTTAGAGGAGGAAGTTGGAAGAACAAGTCATTTAGAGAGGATGACCATGAAGGACAGTTTCATGCCAGACTTTCAAGTGCTGGGAAATCTCCAAGCCCTCCAAACCCAATACGCATAGCCAGATATCAAAAGCATAAAGAGATTCACATTCCCTCGCAGCAAAATACTGTCAATTCCAGAGCAGAATGTTGGAAAATGGCCAAGATTCAAAAGCGATACGAGAAGATAAAGTTTAAGATTCTTGTATGGGAGGGTGAGAAGAAGATGCAGGCCATTCTTCAAAAGGATAGGACCAAGAACGAACTGGAGCAGAAAAGAGCAATGGCAATGCTGCATTACCAGAACAAGATAACAATGATAAATAGGATAGCACAAAGAGCAAGAGCAAAGTTGGAAGACAAAAGAAGAAAGGAAGAATCTAAGGTTAAAGAAAAAGCAAACAAGATCACAAAAACAGGCAGGGTGTGGTGCCTGCATTGTGCAGTACCAAATCCAAACCATAGTGCTGTAACTGTTGGGAACAAAGTGACCCTTTTGCACCGTGGCACCGCATGGTTAAGAGTCTGCATCCATGTCCAAGAGATATTCCTGGCTGCAGAATCTGCAACAGATATTATGGTACTGTTTCCTCAGTTTAAAAGCAGCCCAGTTCCTGTTTGGTACCGTCATTTTAGTAATGTTGTTCTTGTTCTTTCATACTGCTTTTCTGCTGTGAAAATCAAGACCAAGAAGAAGACAGAGACAATAATAAGGAAGAAACAGGCCGTTCCAACTCAACAAGAAGAAATCGAGCAGCTGCTGTCCATAACCAGAAGGCGAAGGGATAGAATTAATCAGAAACTGAAAGCTTTGCAGAGGTTGGTGCCCAAGGCCAGCAAGATGATGATGATGGTGATGCAACAACAGCTTCAGATGTCTATGATGGCCAGAATGGGCCTTGGGCTGGGCTCAGGCTCGGGCCAAGGCCCAGGCTTGGAAGGCCTGATTAATGCCAACACCACCATGGCTGCACGCCCACCAGTTCTTGCTTCTTTTCCACAGCTCACAGTTGCAGCGGCTCCTGCTATTACTCCTTCCTTCATGATGTCTCCATTGGTTCAAGCCCATGCTCCTCCTCCTCCAAAGCCTGAACCTGCATCTGCAACTACCTCCAATGCCTCAATTTCTTTGCCTGATCCTTATGCCACTTTTCTCTCACAAAATATATATAATGGTGCAGTCAGTGAATATGGATATTCTGAGCAACATGGCGGCGCTTTACCGGCAACAGATGAGACAAAACAATCCGAACATGAGCAGCCTGTCGCAACAACAACATCATGGACAAGGGAATTGAGAAGAGAAGAAACCAGAAATGCTGCTTCTCTGAGTGATGAGGGAAACAAATAA 1746 0.4324 MMEENRLKQRRVSLSDPPSQPIVEDEAVIRDDKHGIAVAAATLAIYSIEQAELLNLQKMKEGPVSSSSTQTMRRKEESISRKASYAFRNCYGGLTFIGGITITSFILLGVMGYKDCTIPFRGGSWKNKSFREDDHEGQFHARLSSAGKSPSPPNPIRIARYQKHKEIHIPSQQNTVNSRAECWKMAKIQKRYEKIKFKILVWEGEKKMQAILQKDRTKNELEQKRAMAMLHYQNKITMINRIAQRARAKLEDKRRKEESKVKEKANKITKTGRVWCLHCAVPNPNHSAVTVGNKVTLLHRGTAWLRVCIHVQEIFLAAESATDIMVLFPQFKSSPVPVWYRHFSNVVLVLSYCFSAVKIKTKKKTETIIRKKQAVPTQQEEIEQLLSITRRRRDRINQKLKALQRLVPKASKMMMMVMQQQLQMSMMARMGLGLGSGSGQGPGLEGLINANTTMAARPPVLASFPQLTVAAAPAITPSFMMSPLVQAHAPPPPKPEPASATTSNASISLPDPYATFLSQNIYNGAVSEYGYSEQHGGALPATDETKQSEHEQPVATTTSWTRELRREETRNAASLSDEGNK 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0646 581 Pfam Remorin, C-terminal region 178 274 IPR005516 -
Lele19g0646 581 Gene3D - 376 427 IPR036638 GO:0046983
Lele19g0646 581 Coils Coil 240 267 - -
Lele19g0646 581 PANTHER OS02G0116800 PROTEIN 166 276 - -
Lele19g0646 581 Coils Coil 386 406 - -
Lele19g0646 581 Pfam Helix-loop-helix DNA-binding domain 390 409 IPR011598 GO:0046983
Lele19g0646 581 MobiDBLite consensus disorder prediction 533 581 - -
Lele19g0646 581 MobiDBLite consensus disorder prediction 1 20 - -
Lele19g0646 581 MobiDBLite consensus disorder prediction 486 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0646 Lele-ChrLele19 3709426 3717747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0646 390 432 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 44.231 8.00e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele19g0646 Remorin_C 6.2e-20 No_clan