Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0636 ATGGGTTGTGTCTATTCGAGGCAGACGGTGTCGGTGACGCCGGCGATCGATCACTTCGATCTGTTTCCGGGCAATGCAAGTTTGGGGCACTCGGAAAGGAGCTTGGGAGAGTTGGATGGTAAGAAGAAGAAGAAGAAGAGTGAGTCACAGGGCGTGTCTGATAGAGAGAGTTCAAACTGGGGATGTGATGAATCTCTGAGCTTCAGATTGGGGAATCTGCAGAAGTATGTGGAAGGAGAACAAGTCGCCGCCGGTTGGCCGGCGTGGCTCACCGCCGTCGCCAGCGAAGCAATTCACGGTTGGGTTCCCCTCCGAGCCGATGCTTTTGAGAAGCTCGAGAAGATTGGGCAGGGAACATACAGTAGCGTGTTTCGAGCGAAGGAACTTGAGACGGGGAAGATAGTGGCACTGAAGAAGGTGAGGTTTGACATATTTGAACCAGAAAGTGTGAGGTTTATGGCCCGAGAGATAATGATTCTGAGAAGGCTTGATCATCCAAACATTGTAAAATTGGAGGGTTTGATTACTTCCAAGTTATCATCTACCATATACCTTGTGTTTGAGTACATGGAACATGACATCACGGGCCTCTTGTCCAGCCCTGATATCAAATTTAGTGAATCACAGATTAAATGCTACATGAAACAGCTGTTGTCTGGTCTTGATCATTGTCATTCACGTGGTGTGATGCATAGAGATATAAAAGGATCAAATCTTCTGGTGAACAATGAAGGGATACTAAAGGTTGCTGATTTTGGATTGGCAAAATTCTCTGTTTCTGGGAAAACGCAGCCGCTTACTAGCCGTGTTGTCACTTTGTGGTACCGTCCTCCCGAACTTTTGCTGGGTTCCACAGATTATGGTCACTCTGTGGATCTATGGAGTGTTGGCTGTGTATTTGCAGAACTTCTTGTTAGAAAGCCTATTCTTCAGGGGAGAACAGAGGTGGAACAATTGCACAAAATTTTCAAACTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACCAAGCTTCCTCATGCAACTTTGTTTAAGCCTCAGCATACATACAATAGTTGCCTCCAAGATACCTTTAAAGATTTCCCCATAACTACTGTGAATCTTCTTCAAACTCTTCTTTCCATCGAATCATACAAGCGTGGAACTGCTTCATCTGCTCTTTCATCAGAGTATTTCAAGACAAAGCCTTATGCATGTGAACCGTCGACCTTGCCGGTATACTCACCCAGCAAGGAGATTGATGCAAAACACTGGGGGGAGTCAAGAAGAAAAAAGATCGGTGGAAGATCTCGTGGACCCGAAACAAGAAAACCATCAAGAAAGCCGCCAGGATTCAGTAAACTAGCCCCAGCGGAGAGTTTGGCGAATCAATCTCGAAATTTGCAAGCATTCAATTGTAGAACTTCCAGCATCCTAAAAGAGAACACCAATATAAGTGAGGAGGTGCCAAAGCCATCAACTGATAGAGTCTCAGAAGATGCTTCCCATATTAAGAATCCATCTCATGGAGATATTCCCATATTACAAGTTTCAACTTCGAGTGGGTTTGCATGGGCAAAAAGGCGAAAAGATGATGCTTCAAGAAGATCTCATTGTCGATCTATTTCGAGGGGACATATTTTGAATTCCTCAGAACATTCTTCACTACATTCTTCAAGAAACAACTTTGACAGCAGAAACCAGGAAAATGATAAGGAATTCTGCAACTCAAGGGGGTTGCATGACATACGTGAAATCTCTAAGCTTGCAATGTTGAATCAATGGGGCAAGTTTGATCGCCCAGATTCATTTGATGCTTCTGACGAATACCACTCACAAGAGCTATCTATAGCCCTTCATCAGAGAGAATATTCAGCATCCAGGAGAAGTAAAAGGGATTCTGGAGAGAAGGTAGAATTTTCAGGACCACTGCTATCTCAAATGCATGCGGTCGATGAGCTCTTAGAAAGACATGAGCGTCACATCCGCCGTACAGTACGAAGATCTTGGTTTCAGAAAGGTAAGAAGCATGAGAGGAAATTGGAAGACTAA 2034 0.444 MGCVYSRQTVSVTPAIDHFDLFPGNASLGHSERSLGELDGKKKKKKSESQGVSDRESSNWGCDESLSFRLGNLQKYVEGEQVAAGWPAWLTAVASEAIHGWVPLRADAFEKLEKIGQGTYSSVFRAKELETGKIVALKKVRFDIFEPESVRFMAREIMILRRLDHPNIVKLEGLITSKLSSTIYLVFEYMEHDITGLLSSPDIKFSESQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLAKFSVSGKTQPLTSRVVTLWYRPPELLLGSTDYGHSVDLWSVGCVFAELLVRKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQHTYNSCLQDTFKDFPITTVNLLQTLLSIESYKRGTASSALSSEYFKTKPYACEPSTLPVYSPSKEIDAKHWGESRRKKIGGRSRGPETRKPSRKPPGFSKLAPAESLANQSRNLQAFNCRTSSILKENTNISEEVPKPSTDRVSEDASHIKNPSHGDIPILQVSTSSGFAWAKRRKDDASRRSHCRSISRGHILNSSEHSSLHSSRNNFDSRNQENDKEFCNSRGLHDIREISKLAMLNQWGKFDRPDSFDASDEYHSQELSIALHQREYSASRRSKRDSGEKVEFSGPLLSQMHAVDELLERHERHIRRTVRRSWFQKGKKHERKLED 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0636 677 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Lele19g0636 677 SUPERFAMILY Protein kinase-like (PK-like) 102 398 IPR011009 -
Lele19g0636 677 PANTHER CELL DIVISION PROTEIN KINASE 107 397 - -
Lele19g0636 677 MobiDBLite consensus disorder prediction 522 567 - -
Lele19g0636 677 FunFam probable serine/threonine-protein kinase At1g54610 192 432 - -
Lele19g0636 677 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0636 677 MobiDBLite consensus disorder prediction 476 509 - -
Lele19g0636 677 MobiDBLite consensus disorder prediction 33 60 - -
Lele19g0636 677 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0636 677 Gene3D Transferase(Phosphotransferase) domain 1 192 431 - -
Lele19g0636 677 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Lele19g0636 677 MobiDBLite consensus disorder prediction 486 500 - -
Lele19g0636 677 MobiDBLite consensus disorder prediction 416 442 - -
Lele19g0636 677 CDD STKc_CDK9_like 109 393 - -
Lele19g0636 677 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0636 677 MobiDBLite consensus disorder prediction 617 636 - -
Lele19g0636 677 MobiDBLite consensus disorder prediction 537 557 - -
Lele19g0636 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Lele19g0636 677 MobiDBLite consensus disorder prediction 618 632 - -
Lele19g0636 677 MobiDBLite consensus disorder prediction 416 448 - -
Lele19g0636 677 MobiDBLite consensus disorder prediction 34 52 - -
Lele19g0636 677 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0636 Lele-ChrLele19 3660730 3664692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0636 101 425 Core Cell Cycle Gene Families AT5G10270 49.267 1.61e-106 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele19g0636 Pkinase 2.9e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0926 17 20341262 20344926 Lele19g0636 19 3660730 3664692 hybridization
Lele18g0603 18 3598309 3605914 Lele19g0636 19 3660730 3664692 hybridization