Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0633 ATGAAACGAAGGACGCAGAATCGCCCACGATACTTCAATTTCCTCCCCTATTTCTCATTCTCGCTACTGAAAAACAACGACACCAAAGTTTGCTCCTTTACTGCTTTTACGGCGGGAGAATCGACTTCTTCTTCAGTTGTTCTTACCATGGACGGTCTTGACGACGTCGAAAATTACGTTTGGGCACATGAACAAGAAGGTTTGGCATGGGACACATACCGTCATATTTTCGAACTTGTGCATAATGGCAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCAGCAACCGTTGTGCAGCTTATCTTAGGATTAGCAAATTATTAAAAGACAGGTCACCATCGGCTTCAGAATGTAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTATTGACCTGCGAAGTAATTCAGTAAGATCATACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGACGCTATTCTTTCAGGCCTTCAAGTTGATCCGTTTAGCGATTCCTTGCGAGCTTCACTTAAAAGTTTGGATGTAGTATCTGCTAGTTTGACGGGGACGAGTAGACATGGACAACCAGAGATGAGTACACATGGACAACCAGAGCGCAGTGATGACTTTGATTGCACCATTTGCCTGAAGTTGTTATATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACGGTTCTTTTTATCAGTCCTCGAACGTGTTCCATCAGTGTGACATTGAAGAATATCATACAGAAGAACTTTCCGGAAGAATATGTCAAAAGGAAGCAAGAGCATGAAAATTTGATCAACTTTGGTGTAGATTTGATTCCTCTTTTTGTCATGGATGTTGCCATGCCATGTCAAAAGTTCCCGCTCAATATATTTGAACCTCGATATAGACTTATGGTCAGAAGAGTAATGGAAGGGAATCATAGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGCGAAGTGGAAATTACAGAGTGTGAGCCACTTCCGGATGGACGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATAATCCGATCTCGGAATCAAGATGGATATCGTGTAGCAGAGGTTGAATGGATACAGGATATCATGCCACCAGAAGGTAGTTTAGAGAAACAGTATTTACTGGGATTGACATATGATGCAGCTGAAACTGCTCGTTCATGGATAAGAAGAGCTAAAGAAGCAGCAAGAGCAAAACAAGATCAAAGAAGACTTGAGAGAATCCAGTCTGTTGAATTGATGATGCCCAGTCTAAACGATCCAGAGCTCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGTTGAGGCCTCTTGAAAGATTAGATCTTATGGGCTTAAGAGATACTAGAGAGAGGATTAAGCGTGGACTGAATTATCTGCGAGCAGAGGAACAACGCTGCAGAATTCAATAA 1605 0.4187 MKRRTQNRPRYFNFLPYFSFSLLKNNDTKVCSFTAFTAGESTSSSVVLTMDGLDDVENYVWAHEQEGLAWDTYRHIFELVHNGNMSFRENRLEEAINFYSRANSIKPGDPVILSNRCAAYLRISKLLKDRSPSASECKPLSGLDPTIHAELGLKDAEKLIDLRSNSVRSYLLKANALFLLEKYEKARDAILSGLQVDPFSDSLRASLKSLDVVSASLTGTSRHGQPEMSTHGQPERSDDFDCTICLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYVKRKQEHENLINFGVDLIPLFVMDVAMPCQKFPLNIFEPRYRLMVRRVMEGNHRMGMAIIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESRRRFRIIRSRNQDGYRVAEVEWIQDIMPPEGSLEKQYLLGLTYDAAETARSWIRRAKEAARAKQDQRRLERIQSVELMMPSLNDPELFSFWLASLSKLRPLERLDLMGLRDTRERIKRGLNYLRAEEQRCRIQ 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0633 534 SUPERFAMILY PUA domain-like 326 524 IPR015947 -
Lele19g0633 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 320 IPR013083 -
Lele19g0633 534 Gene3D - 324 426 IPR046336 -
Lele19g0633 534 SMART tpr_5 76 109 IPR019734 GO:0005515
Lele19g0633 534 SMART tpr_5 167 200 IPR019734 GO:0005515
Lele19g0633 534 SUPERFAMILY RING/U-box 237 305 - -
Lele19g0633 534 SMART lon_5 325 526 IPR003111 -
Lele19g0633 534 Pfam ATP-dependent protease La (LON) substrate-binding domain 326 524 IPR003111 -
Lele19g0633 534 Gene3D Tetratricopeptide repeat domain 75 212 IPR011990 GO:0005515
Lele19g0633 534 ProSiteProfiles Zinc finger RING-type profile. 242 280 IPR001841 -
Lele19g0633 534 PANTHER RING FINGER PROTEIN 127 60 526 - -
Lele19g0633 534 ProSitePatterns Zinc finger RING-type signature. 257 266 IPR017907 -
Lele19g0633 534 ProSiteProfiles TPR repeat profile. 76 109 IPR019734 GO:0005515
Lele19g0633 534 ProSiteProfiles Lon N-terminal domain profile. 323 526 IPR003111 -
Lele19g0633 534 Pfam Zinc finger, C3HC4 type (RING finger) 242 279 - -
Lele19g0633 534 SMART ring_2 242 279 IPR001841 -
Lele19g0633 534 SUPERFAMILY TPR-like 77 203 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0633 Lele-ChrLele19 3638784 3644120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0633 230 286 C3H Transcription Factor Family AT4G27470 40.299 2.39e-09 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0929 17 20362291 20367452 Lele19g0633 19 3638784 3644120 hybridization
Lele18g0601 18 3587738 3592606 Lele19g0633 19 3638784 3644120 hybridization