Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0628 ATGGAGACTGAGGAATTTAATTTGAACATTGAATCTGTCGTTGGTGCTGGAAATAATTGCAAGAGTGGTGATGGATTCATTGATAGAAGCAAAGTCAGGATTTTGTTATGTGACAATGATGCCAAGAGTTCGGAAGAGGTTTTTACTCTTCTCTTGAAGTGCTCTTACCAGGTTACTTCAGTGAGGTCAGCGAGACAGGTAATTGATGCGTTGAACGCAGAAGGGCAAGATATTGATATCATACTTGCTGAAGTTGACCTCCCTATGAAGAAGGGTTGGAAAATGTTGAAGTACATTGCACGAGACAAGGAACTGCGCCGAATCCCTGTTATAATGATGTCGGCACAAGACGAGGTATCCATTGTTGTTAAGTGCCTAAAACTCGGAGCAGCTGACTATCTAGTAAAGCCTTTACGGACTAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGGCTTGTAGAGAAGAACATCTTAAACTATGACTTTGATGTGGTTGTATCTGATCCTAGCGACGGCAATACCAACAGTACCACCTTATTCTCAGATGAAACAGATGACAGGTCCAAGCGAAGCACTAATCCTGAGACGGCAATGCCTATCCAACAGGAACTCGAGTCGCCTGTTGCTGTTGCCTCTGCTGCTGTAGTAGTTACTGAGGAGCCTCCAAATGTTCAAGCATCAGAATATGGCCCTGAAGTGCCTGGAATTAGTGATCGCCGAACTGGACATTTTTCGGTTGGTCCCAAGAAGAGTGAACTTAAGATTGGGGAGTCATCAGCCTTCTTCACTTATGTCAAAGCGGCCACAATGAAGAGCAACTTCCAACCAGTCACTACAGAGTTGAGGTTGGAAGATACAAATCAAGCATGCCCTGAACAAGGGGTTAATGATCTTCAAATACATGAAAATGGAGAGACATGTAAAAGCCATTCACAGTATGACTTGCCCGGCAGTAACAGCATCCCGGATTCTTTCTCCATCGAAAGGTCTTCTACTCCTCCTGCATCAATGGAAACTTCACAGCAAAAACACTTCATGGAAGAACCTTTACCTCAGGGTATGATCCATCCAAGAAATGAAACTCATAATTCTGAACACGAAGTATCTGGCATGACCAGCCAACATCATCATTATCCATATTATATTTCAGGGGTTGTTAATCCCATTATGATGCCATCATCAGCACAATTGTACCAGAAGAATCTTCAGGACCTGCAGGCCCATGCTGGTACAGCTATCATTGCACAATACAATCATCTTTCGCAAGGTCCTCCTCATACGACGGGTATGACATCCATCCCATATTACCACCCGATGGGTTTGTACTTACAGCCTGGACAGATGTCTACTGTTCATTCATGGCCATCCTTTGGTAATTCGAGTTCTTCTGAAGTCAAAATAAGTAAAGTCGATAGAAGAGAAGCGGCATTGATGAAGTTTAGGCAGAAAAGGAAAGAGCGCTGCTTTGATAAAAAAATTAGGTATGTCACCAGGAAACATCTTGCTGAAAGACGTCCACGAGTAAGAGGACAGTTTGTTAGAAAGTTGAATGGCGTAAACGTAGATCTTAATGGCCAACCTGCTTCCACTGACTATGATGAGGATGATGAAGAAGATGAGGATGATCAAGCAGCGCGAGATTCCTCTTTTGAGGATGCTTGA 1683 0.4332 METEEFNLNIESVVGAGNNCKSGDGFIDRSKVRILLCDNDAKSSEEVFTLLLKCSYQVTSVRSARQVIDALNAEGQDIDIILAEVDLPMKKGWKMLKYIARDKELRRIPVIMMSAQDEVSIVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDVVVSDPSDGNTNSTTLFSDETDDRSKRSTNPETAMPIQQELESPVAVASAAVVVTEEPPNVQASEYGPEVPGISDRRTGHFSVGPKKSELKIGESSAFFTYVKAATMKSNFQPVTTELRLEDTNQACPEQGVNDLQIHENGETCKSHSQYDLPGSNSIPDSFSIERSSTPPASMETSQQKHFMEEPLPQGMIHPRNETHNSEHEVSGMTSQHHHYPYYISGVVNPIMMPSSAQLYQKNLQDLQAHAGTAIIAQYNHLSQGPPHTTGMTSIPYYHPMGLYLQPGQMSTVHSWPSFGNSSSSEVKISKVDRREAALMKFRQKRKERCFDKKIRYVTRKHLAERRPRVRGQFVRKLNGVNVDLNGQPASTDYDEDDEEDEDDQAARDSSFEDA 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0628 560 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Lele19g0628 560 MobiDBLite consensus disorder prediction 316 343 - -
Lele19g0628 560 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Lele19g0628 560 ProSiteProfiles CCT domain profile. 480 522 IPR010402 GO:0005515
Lele19g0628 560 MobiDBLite consensus disorder prediction 180 206 - -
Lele19g0628 560 Gene3D - 32 233 - -
Lele19g0628 560 Pfam CCT motif 480 522 IPR010402 GO:0005515
Lele19g0628 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 230 IPR045279 GO:0009736
Lele19g0628 560 MobiDBLite consensus disorder prediction 526 560 - -
Lele19g0628 560 SMART REC_2 32 147 IPR001789 GO:0000160
Lele19g0628 560 MobiDBLite consensus disorder prediction 536 560 - -
Lele19g0628 560 SUPERFAMILY CheY-like 28 157 IPR011006 -
Lele19g0628 560 MobiDBLite consensus disorder prediction 314 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0628 Lele-ChrLele19 3624541 3628590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0628 20 559 Response Regulator Gene Family AT5G61380 50.555 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele19g0628 Response_reg 2.2e-17 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0932 17 20377812 20381923 Lele19g0628 19 3624541 3628590 hybridization
Lele18g0597 18 3571290 3575165 Lele19g0628 19 3624541 3628590 hybridization