Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0612 ATGGTGGAGGCTCCTCATGGCCTGCTAGCTAGCTTTGCTTGTGCATTTCGAAGGCCTGCGGTGAATGTGTCAGGTTCTATGCAGGGAAGGACATGGATCAATATCATCATTGGATTTAATCCAACTATCACTGTTGCTCCATTCTATCCGTACATAGGGATTAAAGAGGGATTTGTTGTTGGGAATCGAGCGATGAAGAAGAGACAGGTGGTTGTGAAGAGAGATGTCGCCAAGACTTCGTCGTCGGTGATGAGGAACGTCAGATATTTGGAGTGTCAGAAGAATCACGCCGCCAACATAGGAGGCTACGCCGTCGATGGTTGCAGAGAGTTCATGGCCAGTGGTGATGACGTCACTGCCGGAGCTCTTACCTGTGCTGCTTGCGGCTGCCACAGGAATTTCCACAGAAGAGAAGTTCAGACCGAGGTTGTCTGTGAGTACTCTCCTCCTAATTCCGCTTGCTAA 465 0.4968 MVEAPHGLLASFACAFRRPAVNVSGSMQGRTWINIIIGFNPTITVAPFYPYIGIKEGFVVGNRAMKKRQVVVKRDVAKTSSSVMRNVRYLECQKNHAANIGGYAVDGCREFMASGDDVTAGALTCAACGCHRNFHRREVQTEVVCEYSPPNSAC 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0612 154 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 89 138 IPR006456 -
Lele19g0612 154 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 88 139 IPR006456 -
Lele19g0612 154 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 70 142 - -
Lele19g0612 154 Pfam ZF-HD protein dimerisation region 86 139 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0612 Lele-ChrLele19 3525789 3528177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0612 65 152 Zinc finger-homeobox gene family AT1G18835 78.652 8.81e-43 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele19g0612 ZF-HD_dimer 3.2e-29 No_clan