Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0611 ATGGGAAGGCCACCTTGTTGCGACAAATTTGGGATCAAGAAGGGCCCTTGGACTCCCGAGGAAGACATCATTTTGGTCTCTTATATTCAAGAACATGGACCTGGAAATTGGAGATCTGTTCCCACTAAAACAGGTCTGATGAGATGCAGTAAAAGTTGCAGACTTCGATGGACCAACTATCTTCGTCCTGGTATCAAAAGAGGCAACTTCACCGATCACGAGGAGAAGATGATCATCCATCTCCAAGCTCTGCTCGGCAACAGATGGGCTGCGATAGCTTCGTATCTTCCACAGAGGACGGACAATGACATAAAGAATTATTGGAACACCCATTTGAAGAAGAAGCTGAAGAGGCTCCAAACTGGGAGTGATGGCGACGACCAAGAAGACGACTCGGCGGCACAGCCCAAGGGCCAGTGGGAGAGAAGGCTTCAGACAGATATCCACATGGCCAAACAGGCTCTACACGAGGCTCTGTCCCTCGACAAGCCAACTGAAACCGAAAACAGGCCTTTCATTCCCACAGTCCAAACATGCCCTTACGCATCAAGCACAGAAAACATAGCCCGATTACTCCAGAACTGGATGAACAAATCCCCAATGGACCAAGCACAACCAGGAGCTAGCTTCTTCAACAGTGGCACAACAGGTTCCAGTTCGTCGAGCGAAACGGCGACGTATAGGAACAACAATGTTCTAGATTCTCTATGGAGCTTCAACTCTGATGCTTCTCAACAATCTGTGTCCGTGGACGACAGCACCAACAACAGCATGTTCCAAGACGAAAGCAAGCCGACTACCTCGGAGTTGCATCATCAGCATCCTCTGACTATAATCGAGAAGTGGCTCCTCTTTGACGATAGCGTAGCTCAGAACCAGGATGATGACCTAATCAAAGACTCGCTTCTGGAACAAACCACACCGCAATTGTTCTAG 936 0.4872 MGRPPCCDKFGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTKTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKRLQTGSDGDDQEDDSAAQPKGQWERRLQTDIHMAKQALHEALSLDKPTETENRPFIPTVQTCPYASSTENIARLLQNWMNKSPMDQAQPGASFFNSGTTGSSSSSETATYRNNNVLDSLWSFNSDASQQSVSVDDSTNNSMFQDESKPTTSELHHQHPLTIIEKWLLFDDSVAQNQDDDLIKDSLLEQTTPQLF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0611 311 Gene3D - 68 145 - -
Lele19g0611 311 MobiDBLite consensus disorder prediction 247 272 - -
Lele19g0611 311 SMART sant 13 63 IPR001005 -
Lele19g0611 311 SMART sant 66 114 IPR001005 -
Lele19g0611 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele19g0611 311 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele19g0611 311 FunFam Transcription factor MYB30 68 126 - -
Lele19g0611 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 245 - -
Lele19g0611 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele19g0611 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele19g0611 311 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele19g0611 311 Gene3D - 13 66 - -
Lele19g0611 311 FunFam MYB-related transcription factor 13 66 - -
Lele19g0611 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele19g0611 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele19g0611 311 MobiDBLite consensus disorder prediction 119 140 - -
Lele19g0611 311 CDD SANT 16 61 IPR001005 -
Lele19g0611 311 MobiDBLite consensus disorder prediction 247 264 - -
Lele19g0611 311 MobiDBLite consensus disorder prediction 203 225 - -
Lele19g0611 311 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0611 Lele-ChrLele19 3516992 3518136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0611 1 287 MYB Transcription Factor Family AT5G62470 51.312 8.73e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele19g0611 Myb_DNA-binding 5.3e-15 CL0123