Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0603 ATGGATTCCTCCAAATTCTCCCATGGCTATGGCAAAGTAGGTGATCACCTCGAAGATCAGCCCTCTTTCCCCAGATCTCCCAACCGCAACCTCCTTGTCGCCATCATTTCTGTTTTGGCCATCCTCTTCCTTACTCTCTCTGTCGGTGTCACACTCGGAGCTCTCATCCACTACTCTACTTCCGGACAATCGGAATCTCGACCAACCCCTTCCACCGCCAACACCGGCGTCGCCGCCTCCATCAGAACCGTCTGCAACGTCACTCGCTTCCCGGCCTCCTGCTACTCCAGTATTTCCTCCCTCATCACTTCCGTCCAAAACCCTAACGACCCCGAATCCATTCTCAATCTGTCTCTTCGTGTTTCCCACAACGAACTCTCTAACCTGTCGTCCTCCATGAGAACCTTGGCTTCGACCTCCAACGCGCCCGCTCTCCCTGATTGTAAGGATCAGATCGATGACGCGCTGAGTCGACTCAACGACTCGCTGTCAGCAATGGATGTGGCTCCCGGCGAGAAGGTATTGACGGATGAGAAGATCAACGACATACAGACGTGGATCAGCGCGGCGGTGACGGACCAGGAAACATGCTTGGATGGATTGGAGGAGACAGAGTCGGCGGCGCTAGGGGAGATGAAGGGGAAAATGCAGATGTCGAGGGAATACACAAGCAACAGCTTAGCCATCGTTGCACATATTCACATCTTACTACAACGCTTCAATATGCCCCTTCATTGA 738 0.5339 MDSSKFSHGYGKVGDHLEDQPSFPRSPNRNLLVAIISVLAILFLTLSVGVTLGALIHYSTSGQSESRPTPSTANTGVAASIRTVCNVTRFPASCYSSISSLITSVQNPNDPESILNLSLRVSHNELSNLSSSMRTLASTSNAPALPDCKDQIDDALSRLNDSLSAMDVAPGEKVLTDEKINDIQTWISAAVTDQETCLDGLEETESAALGEMKGKMQMSREYTSNSLAIVAHIHILLQRFNMPLH 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0603 245 Pfam Plant invertase/pectin methylesterase inhibitor 80 229 IPR006501 GO:0004857
Lele19g0603 245 FunFam Pectinesterase 77 234 - -
Lele19g0603 245 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 234 IPR035513 -
Lele19g0603 245 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 233 IPR035513 -
Lele19g0603 245 PANTHER PECTINESTERASE INHIBITOR-LIKE 40 229 - -
Lele19g0603 245 TIGRFAM PME_inhib: pectinesterase inhibitor domain 74 234 IPR006501 GO:0004857
Lele19g0603 245 CDD PMEI-like_3 83 234 - -
Lele19g0603 245 MobiDBLite consensus disorder prediction 1 22 - -
Lele19g0603 245 SMART PMEI_2 76 229 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0603 Lele-ChrLele19 3465975 3466712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0603 1 245 Carbohydrate Esterase AT1G53840 37.743 4.62e-37 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0955 17 20544178 20544915 Lele19g0603 19 3465975 3466712 hybridization
Lele18g0574 18 3398908 3399645 Lele19g0603 19 3465975 3466712 hybridization