Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0602 ATGTCTGGTCAAAAAAGTTGCAGAGCTTCAAACTTCAACGAGAATGAGATTAATGATCTTGTGTCCAAGTTACAAGCACTTCTGCCTCAACTGAACCGAAGGACTGACTCTAGGGTATCAGTGTCGAAGATCTTGAAAGAAACTTGCAGTCACATCAAGAAGCTACACAAGGAAGTGGAAGAGCTTAGTGAAAGGATAATAGAGCTGATGGATTCTGCTGACATTAGGGATATAGACGAAGAGAGTCTTAGAAGATTATTGCTACATTGA 270 0.4037 MSGQKSCRASNFNENEINDLVSKLQALLPQLNRRTDSRVSVSKILKETCSHIKKLHKEVEELSERIIELMDSADIRDIDEESLRRLLLH 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0602 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 70 IPR036638 GO:0046983
Lele19g0602 89 PANTHER DNA BINDING PROTEIN 4 87 IPR044172 -
Lele19g0602 89 Coils Coil 45 72 - -
Lele19g0602 89 Pfam Helix-loop-helix DNA-binding domain 16 55 IPR011598 GO:0046983
Lele19g0602 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 55 IPR011598 GO:0046983
Lele19g0602 89 Gene3D - 14 85 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0602 Lele-ChrLele19 3463839 3464500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0602 1 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 48.101 7.52e-17 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele19g0602 HLH 1.5e-05 No_clan