Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0599 ATGTCTGTACAGTGGCCTCTCGTTTGTCGCGTCCGAGACGATCGAAACTGCTCTCTCTGCCCCATTTTTGCGTCTTTATCTGAAATTTCAAATGTCTCTAACAAATATTATACTCATGCTTCAAAAGTTCCTGGTAGAAGCAACCATTCCTGTTTAAATAAGTTAGTGCTTGAATACAACAACAAGGATAAATCTCTGACTCTCTGCGCCCCAAGATCCGAATGCGATATACTTTCCTCACCAAATTTGAAGGCCTTCACATTTAATGAACTTAAAAGTTGCACTAGAAACTTTGGTCCTGATAACCTAATAGGACAAGGGGGCTTTGGTGATGTGCACAAGGGGTGGATTGATGAGCAATCCCTTAGTGCTGCTAAGCCTGGATCCGGGATGGTTGTGGCCGTGAAGAAGTTGAAACCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTTGTAGGTTACTTTTCTCAACACTTAATCCTGCTGATTTTCTTTGAAATAATGAATGCCCATCATAAATTTCTTGGTTTACAGTGTGAAGTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTATTGGATACTGCCTCGATGGAGACAACCGGCTTCTAGTATACGAGTACATGCCCAAAGGCAGCTTGGAGAACCATCTATTTCGCAGGGGCTCACAGTCACTTTCATGGGCAACAAGGATCAAAGTTGCCATCGATGCTGCTCGTGGCCTTGCCTTTCTACACGACTCCAATCCACAAGTTATCTACCGTGATTTTAAGGCTTCGAATGAATTTAACGCAAAACTCTCAGACTTTGGGTTGGCTAAAGCAGGACCAACTGGTGATCGTTCTCACGTCTCAACTCAAGTCATGGGTACTCACGGCTATGCTGCTCCTGAATATATTGCTACAGAAAGCAAGTCTGTATCTAGTCACCCAAGTGACAGCACTATGAACTTGCCATCATCTTTGAGATCCCAAGGGGGTGATAAAAGAGGAGTGTGTCTCATTCGAAGGCCCTCCATAGCAAGCAAACTTGTTGCGTCTTTGGCCTTGAGCCCCCTTCCCGGCACTACTTCTATAGCTCGCGTAATCGCTGATCGTAATCAAGGGGAACAGTTGCACGCTCAAGTGTGCAAACTAGGATTCTCGCATGAGCTTATAATCGGAACTGCAATTATGCAAATGTATGCGTCGTATGATAGGATTTCTCACGCGGAACAAGTGTTCGATGAAATAGCCCAAAGAGATTTGGTTATGTGGAACTCCCTTATTGCTTTATATGCTCAAAAAGGATTCCCTTTGAAAGCACTTCAAGGTTTGCATAGTATGGTCATGAATAATATTCGGCCTAATGAGGTGACTGCAGCAAGTGTTGTTTCTTCTTGCTCTTCGATGAAAGCATTGAAAGAGGGCAGAGTAGTCCATGGTTATGTGATCAGAAATCTCTTCCATTTTGATATTTTTCTCAACAATGCCTTGATTGGAATGTATTCAAATTGTGAGGACCTTTCAAAGGCCCTCCTCATCTTTCTATTGATGCCTTCAAGAAATGTGGTTTCATGGACATCAATGATCAAGGCTTATGTTGATAACAACTGTCCACATGATGCATTGAATCTGTTCACCAAGATGGAATCTGTAAACATAAGACCAGATGAGGTTACCGTGTTAGCGTTAATTTCAACGTGCTCCAAATTGGGACGCTATGAACTTGGACTACATATTGAAGACTATATAGAGAAGAACATGATTAGTAAAGAGAATCACTCCATTGCAAATGCTTTAATGGACATGCATGCCAAATGTGGTAATATAAAGAAGGCCTGCCAAATTTTTGATGAGATGGTGCAGAAAACTCTAGTCTCTTGGACTACAATCATTAACGGGTTAGCAAGGCATGGCCATGGCATGCCAGCATTAGTCCGATTCTGTCAGATGCAAAGAGAAGGCTTTAAACCAGATGGTGTCATGTTCCTCAGCATCTTATCTGCTTGTAGCCATGCAGGTTTAGTGGATGAGGGGTTGAAATGTTTTGAATCAATTAGTACTGATTATCATATAGAGCCATGGGTGGAGCACTATGGAAGTATTGTGGATCTTCTATGCAGGGCGGGGCTAGTGAAAGAGGCGTTAGACTTTGCTGAGGCAATGCCATTAAAACCAGATACTGTGGTGTGGCGAATGCTGCTCGGAGCATGTCAAAGGCAAAGTAACACGGAGCTAACAATTCGTGTTGCAAATATTTTACATGAAGCTGGGCCTAAAAGTATTGAAGATTATGTACTTCTGTCTAATTCTCACGCAGCCATGGAAGGATGGAGCGGTGTACAAGAACTAAGGGGAGAAATGAAGATCATGGGTTTAAGGAAGCAAGACTCGGGCAGTAGTTTGGTAGGGGTAGGTCATGCTTTATAA 2418 0.4272 MSVQWPLVCRVRDDRNCSLCPIFASLSEISNVSNKYYTHASKVPGRSNHSCLNKLVLEYNNKDKSLTLCAPRSECDILSSPNLKAFTFNELKSCTRNFGPDNLIGQGGFGDVHKGWIDEQSLSAAKPGSGMVVAVKKLKPEGFQGHKEWLVGYFSQHLILLIFFEIMNAHHKFLGLQCEVNYLGQLHHPNLVKLIGYCLDGDNRLLVYEYMPKGSLENHLFRRGSQSLSWATRIKVAIDAARGLAFLHDSNPQVIYRDFKASNEFNAKLSDFGLAKAGPTGDRSHVSTQVMGTHGYAAPEYIATESKSVSSHPSDSTMNLPSSLRSQGGDKRGVCLIRRPSIASKLVASLALSPLPGTTSIARVIADRNQGEQLHAQVCKLGFSHELIIGTAIMQMYASYDRISHAEQVFDEIAQRDLVMWNSLIALYAQKGFPLKALQGLHSMVMNNIRPNEVTAASVVSSCSSMKALKEGRVVHGYVIRNLFHFDIFLNNALIGMYSNCEDLSKALLIFLLMPSRNVVSWTSMIKAYVDNNCPHDALNLFTKMESVNIRPDEVTVLALISTCSKLGRYELGLHIEDYIEKNMISKENHSIANALMDMHAKCGNIKKACQIFDEMVQKTLVSWTTIINGLARHGHGMPALVRFCQMQREGFKPDGVMFLSILSACSHAGLVDEGLKCFESISTDYHIEPWVEHYGSIVDLLCRAGLVKEALDFAEAMPLKPDTVVWRMLLGACQRQSNTELTIRVANILHEAGPKSIEDYVLLSNSHAAMEGWSGVQELRGEMKIMGLRKQDSGSSLVGVGHAL 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0599 805 FunFam Pentatricopeptide repeat-containing protein chloroplastic 471 571 - -
Lele19g0599 805 Pfam PPR repeat family 517 565 IPR002885 -
Lele19g0599 805 Gene3D Phosphorylase Kinase; domain 1 70 210 - -
Lele19g0599 805 ProSitePatterns Protein kinases ATP-binding region signature. 104 137 IPR017441 GO:0005524
Lele19g0599 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 619 IPR002885 -
Lele19g0599 805 Gene3D Transferase(Phosphotransferase) domain 1 211 316 - -
Lele19g0599 805 Gene3D Tetratricopeptide repeat domain 594 800 IPR011990 GO:0005515
Lele19g0599 805 ProSiteProfiles Protein kinase domain profile. 98 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0599 805 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 366 801 - -
Lele19g0599 805 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 591 805 - -
Lele19g0599 805 MobiDBLite consensus disorder prediction 307 326 - -
Lele19g0599 805 Pfam Protein kinase domain 176 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0599 805 FunFam Pentatricopeptide repeat-containing protein chloroplastic 369 470 - -
Lele19g0599 805 Pfam PPR repeat 419 449 IPR002885 -
Lele19g0599 805 Pfam PPR repeat 694 718 IPR002885 -
Lele19g0599 805 Pfam PPR repeat 622 652 IPR002885 -
Lele19g0599 805 Pfam PPR repeat 594 619 IPR002885 -
Lele19g0599 805 Pfam PPR repeat 657 681 IPR002885 -
Lele19g0599 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Lele19g0599 805 TIGRFAM PPR: pentatricopeptide repeat domain 520 554 IPR002885 -
Lele19g0599 805 TIGRFAM PPR: pentatricopeptide repeat domain 622 655 IPR002885 -
Lele19g0599 805 TIGRFAM PPR: pentatricopeptide repeat domain 594 618 IPR002885 -
Lele19g0599 805 Pfam E motif 738 792 IPR046848 -
Lele19g0599 805 SUPERFAMILY Protein kinase-like (PK-like) 76 307 IPR011009 -
Lele19g0599 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Lele19g0599 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Lele19g0599 805 Gene3D Tetratricopeptide repeat domain 366 476 IPR011990 GO:0005515
Lele19g0599 805 Gene3D Tetratricopeptide repeat domain 477 571 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0599 Lele-ChrLele19 3438612 3445365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0599 371 805 Glycoside Hydrolase AT3G49170 31.818 8.33e-67 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele19g0599 Pkinase 8.1e-23 CL0016