Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0593 ATGGAGTTTGCTCTGCGCAGATCTGGCCAACAAGAAGGTGAACCAGTCAAGGAAGAGAAGAGAACCGACTCTACTGCTTCTCATAATCATGAAGCTCCTTCTCATCTCAAAGAAGATACTACTGTTGTCGAGGTGGCACCGATGAATAGATCCGTGGTGGACACTGGACCACCTCATGCATCCTCAGCCGAAAAGGAAGAGGTTGATGAACTTGAATCAGCAAGAGTTGAAATGGGTGAGGTGAGAGAAGAAAACCAAAGGCTAAAGATGTGTTTGGACCGAATCATGAAGGAATATCAGGTTCTGCAAATGCAATTCCGCGTTATGGCTCAACAAGAAGAAGCCGCCACCGCGAAATCTTGTGATCAAAACAATCAAGAGCCACTAACTGAGGAATCCGATCTGGTCTCACTTAGTCTTGGCCCAAAATCTGACGAAAAACCTAAAGTCACCAGCTCCAAACCACCATTGTTGCATTTACAGCGACAAGGAGGAGGAGGAGGAGAAGAAGAATTGAAACAAGACTTGGCTCTTGGACTGGATTGCAAATATGAAACATCAAAATCTGGAAGCACCACTGAAGCTTTGCCAAATAATGCAAGCCCCACCAATAGCTCTGAATTGGTTCATCACAATAAGGAAGAAGCTGGCGAGAGTTGGCCACCAAGTAAGGCACTTCATAACAAAAATCCCAGAGATTCAAGCACAGATCAAGATGAAGTTTCCCAACAAAATCCTGCTAAGAAGGCCAGAGTCTGTGTTAGAGCAAGATGTGACACCCCAACTATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAAATATCCAAGGGAAATCCTTGTCCAAGAGCTTACTATCGTTGCACAGTTGCACCAAATTGTCCCGTCAGAAAGCAGGTGCAAAGATGTGCAGAGGACATGTCGGTTCTAATCACTACCTATGAAGGGAACCATAACCACCCTCTTCCTCTCTCTGCAACTGCTATGGCTTCCACCACTTCTGCAGCTGCTTCCATGATCTCGTCTGGTTCATCTTCAACCTCTAATCTCCCTGGTTCAGTGCTGTCCTCTGATCTTCACGGCATCAACTTCTATCTCTCAGATGGCTCCAAACCAAAGCAATTCTACGTGCCCAATCCTGCACTATCACCTTCACTGTCACACCCAACAATTACCCTCGACCTCACTTCCAATCCTTCCTCTTTAAATTATTTCTCGTCCAACTTCAACAGATTCAACTCAAACTACAATAACAACCCACCCAGATTCCCTTCTTCAACCAGTACCCTCAGCTTCAGTTCCTCAGAATCCAATGCAATGTCGTGGAGCAACAATGTGGGGTTCCTCGCTTACAACTACAACACTCAGCCATACAACAACAACAGGAACATCCTTAGCAGCAACAACCTCGGAAGACAACTACCGATTCAAACTCCTCCTCCTCCTCCTCAAGTACACCAAAATCCTTCACTGCCAGACACCATTGCTGCTGCCACTAAAGTGATCACAGCTGACCCAACTTTTCAGTCAGCTTTGGCTGCGGCACTTACTTCCATTATCGGCACAGGAAATAGTAGTGGTAGTGTTAGTGGGAATAGCACACAAGGCGTTGGAGAAATCAACTTGGGTCAGAAAATTAACCTATGGGGAGATATTTTTGCATCTGGGTCAGCTTCCAAAGTCACAGGACGTGGTTCAAGCTTCTTGAGTAATAAAACAACGCCGGCAGGAACACAGGCTGCTGGAAGTAGTGGTTTGATGTTTCTGCCTCCATCTTTGCCATTTTCTAGCTCCAAGACCGCGTCTGCGTTATCTCCGGCTGATAATAGAGACAAGTCCAATTCGTGA 1851 0.4581 MEFALRRSGQQEGEPVKEEKRTDSTASHNHEAPSHLKEDTTVVEVAPMNRSVVDTGPPHASSAEKEEVDELESARVEMGEVREENQRLKMCLDRIMKEYQVLQMQFRVMAQQEEAATAKSCDQNNQEPLTEESDLVSLSLGPKSDEKPKVTSSKPPLLHLQRQGGGGGEEELKQDLALGLDCKYETSKSGSTTEALPNNASPTNSSELVHHNKEEAGESWPPSKALHNKNPRDSSTDQDEVSQQNPAKKARVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPNCPVRKQVQRCAEDMSVLITTYEGNHNHPLPLSATAMASTTSAAASMISSGSSSTSNLPGSVLSSDLHGINFYLSDGSKPKQFYVPNPALSPSLSHPTITLDLTSNPSSLNYFSSNFNRFNSNYNNNPPRFPSSTSTLSFSSSESNAMSWSNNVGFLAYNYNTQPYNNNRNILSSNNLGRQLPIQTPPPPPQVHQNPSLPDTIAAATKVITADPTFQSALAAALTSIIGTGNSSGSVSGNSTQGVGEINLGQKINLWGDIFASGSASKVTGRGSSFLSNKTTPAGTQAAGSSGLMFLPPSLPFSSSKTASALSPADNRDKSNS 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0593 616 MobiDBLite consensus disorder prediction 187 207 - -
Lele19g0593 616 Gene3D WRKY domain 247 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele19g0593 616 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele19g0593 616 SUPERFAMILY WRKY DNA-binding domain 256 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele19g0593 616 MobiDBLite consensus disorder prediction 60 81 - -
Lele19g0593 616 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele19g0593 616 Pfam WRKY DNA -binding domain 264 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele19g0593 616 MobiDBLite consensus disorder prediction 187 252 - -
Lele19g0593 616 MobiDBLite consensus disorder prediction 112 171 - -
Lele19g0593 616 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 37 534 IPR044810 GO:0003700
Lele19g0593 616 MobiDBLite consensus disorder prediction 116 133 - -
Lele19g0593 616 MobiDBLite consensus disorder prediction 1 81 - -
Lele19g0593 616 MobiDBLite consensus disorder prediction 11 38 - -
Lele19g0593 616 MobiDBLite consensus disorder prediction 565 584 - -
Lele19g0593 616 FunFam probable WRKY transcription factor 31 248 325 - -
Lele19g0593 616 MobiDBLite consensus disorder prediction 597 616 - -
Lele19g0593 616 MobiDBLite consensus disorder prediction 565 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0593 Lele-ChrLele19 3411781 3414879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0593 70 522 WRKY Transcription Factor Family AT1G18860 41.903 1.08e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele19g0593 WRKY 5.9e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0967 17 20594779 20597934 Lele19g0593 19 3411781 3414879 hybridization
Lele18g0566 18 3345424 3349145 Lele19g0593 19 3411781 3414879 hybridization