Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0580 ATGGAGGACAAGTCCCAAGTATTGGAGGCTGTGTTGAAGGAAGCTGTGGATTTGGACAGCAAATTTTTGATGTTTTTGGGCTTTATGTGGAATCCTCTGTCTTGGGTTATGGAGGCTTCTGCCATAATGGCAATTGAACGGAGGGGAGAGATTGAGGCTGTGGTCATTGCCACTGGTGTCCATACCTTCTTTGGGAAAGCTGCTCACCTTGTAGATACCACTAATCAAGTTGGTCACTTCCAAAAGGTCTTGACTGCAATTGGGAACTTCTGCGGAGCTATCACTAAGAGGATGACAGCCATTGAAGAGATGGCAGGCATGGATGTGCTTTACAGTGATAAAACTGGGACTCTAACATTAAACAAGCTATCTGTTGACAAAAAGCTTATTGAGAGGACAGCATTAACTTACATTGATGGTGAAGGTAAAATGCGTAGGGTGAGCAAAGGTGCGCGAGAGCAGATTCTCAATCTTGCACACAATAAGTCAGATATAGAACGCAGAGTCCATGCAATAATAGATAAGTTTGCAGAGCGCGGTCTACGATCTCTTGCCGTAGCATACCAGGAAGTTCCAGAAGGAAGGGAGGAGAGTGCTGGTGGCCCATGGCAGTTCATTGGTGATCAACTTGCTATAGGGAAGGAAACCGGCCGTCGTTTGGGAATGGGGACCAACATTTATCCCTCATCTGCATTGCTTGGGCAGGATAAGGATGAGTCCATTTCTGCACTACCCATTGATGAATTGATAGAAAAAGCTGATGGATTTGCTGGTGTTTTTCCTGAACACAAGTATGAGATTGTGAAACGCTTGCAAGCGAGGAAACATATATGTGGAATGACTGGTGGTGGAGTAAATGATGCCCCTGCTCTTAAAAAGGCTGACATTGGTATAGCTGTTGCCGATGCAACTGATGCCGCTCGCAGCGCATCTGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATTAGTGCTGTTTTGACAAGCCAGGTCATCTTCCAGAATGAAAAATTATACAATATATGCAGTCTCAATTACAATCCGTACTGTGCTTGGTTCATGTTGTTGGCTCTCATATGGAAGTTTGACTTTCCTCCTTTCATGGTGCTAATCATGGCCATCCTAAATGATGGTACTATCATGACAATCTCAAAAGATAGAGCAAAACCCTCTCCTCTGCCTGATAGCTGGAAGCTCGCCGAGATATTTACCACCGGCATCGTACTTGGAAGTTACTTGGCAATGATGACAGTGATATTCTTTTGGGCAGCATACAAAACAGATTTCTTCCTGCGAGTATTTGGGGTCTCAACTCTTGAAAAAACTGCTCATGATGATTTCCGGAAACTTGCCTCGGCGATATATCTTCAAGCGAGCACTATCAGTCAGGCACTTATATTCGTGACTCGGTCTCGAGGCTGGTCATATGTTGAGCGTCCTGGCATGCTGTTAATGACTGCTTTTGTGGTTGCTCAGCTAATTGCCACTTTGATTGCTGTATATGCAAACTGGAGCTTTGCTGCCATTGAAGGAATCGATTGCATTTACAAGGCAAAAGGACTTTGGGAAGGAACAAAGGGAACTTCAACGGCACATGCCCAGAGAACCCTACATGGATTACAAGTACCTGACACCAAGCTCTCCGACCGCACTCATTTCAATGAACTCAATCAAATGGCTGAAAAAGCTAAAAGGAGAGCCGAAATCCCAAGGTAG 1719 0.4456 MEDKSQVLEAVLKEAVDLDSKFLMFLGFMWNPLSWVMEASAIMAIERRGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCGAITKRMTAIEEMAGMDVLYSDKTGTLTLNKLSVDKKLIERTALTYIDGEGKMRRVSKGAREQILNLAHNKSDIERRVHAIIDKFAERGLRSLAVAYQEVPEGREESAGGPWQFIGDQLAIGKETGRRLGMGTNIYPSSALLGQDKDESISALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGGGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSQVIFQNEKLYNICSLNYNPYCAWFMLLALIWKFDFPPFMVLIMAILNDGTIMTISKDRAKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFLRVFGVSTLEKTAHDDFRKLASAIYLQASTISQALIFVTRSRGWSYVERPGMLLMTAFVVAQLIATLIAVYANWSFAAIEGIDCIYKAKGLWEGTKGTSTAHAQRTLHGLQVPDTKLSDRTHFNELNQMAEKAKRRAEIPR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0580 572 Pfam haloacid dehalogenase-like hydrolase 108 295 - -
Lele19g0580 572 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 505 IPR023298 -
Lele19g0580 572 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 256 364 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele19g0580 572 PANTHER CALCIUM-TRANSPORTING ATPASE 131 207 - -
Lele19g0580 572 Coils Coil 572 572 - -
Lele19g0580 572 FunFam Plasma membrane ATPase 202 329 - -
Lele19g0580 572 PRINTS H+-transporting ATPase (proton pump) signature 456 477 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele19g0580 572 PRINTS H+-transporting ATPase (proton pump) signature 169 187 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele19g0580 572 FunFam Membrane H(+)-ATPase1 152 210 - -
Lele19g0580 572 Gene3D - 319 511 - -
Lele19g0580 572 Gene3D - 92 107 - -
Lele19g0580 572 ProSitePatterns E1-E2 ATPases phosphorylation site. 113 119 IPR018303 -
Lele19g0580 572 Gene3D - 108 122 IPR023214 -
Lele19g0580 572 Gene3D - 207 318 IPR023214 -
Lele19g0580 572 PRINTS P-type cation-transporting ATPase superfamily signature 111 125 - -
Lele19g0580 572 PRINTS P-type cation-transporting ATPase superfamily signature 304 316 - -
Lele19g0580 572 PRINTS P-type cation-transporting ATPase superfamily signature 281 300 - -
Lele19g0580 572 SUPERFAMILY HAD-like 104 336 IPR036412 -
Lele19g0580 572 Gene3D - 133 206 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0580 Lele-ChrLele19 3345698 3350691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0580 47 572 Primary Pumps ATPases AT5G62670 59.527 0.0 766