Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0576 ATGGAAGTGAGGTTAGTTCAAACTAGAAGGCCAAATGAGATAAAAAAGGTGACCAAGACACCTGAGGAGAGAAGAAAAGAAATTGAAGTTCGAGTGGCAGCTGCGAGGCTATTGCAGCAAAAGTCAGAGTCACCCCAATCCCAGAACGAAGGGGACAGGGATGAGAAGACATTGGATTCATCTTCAGGAACTGGGCAGAGGATAAGCGAGAGGCGGAACTGTTCTTGGAAACCTCTGGATGCCTCTGCTGCTGTCAAAATGCTTGAAGATCAAGCAAAATGCAAAGAATTTTCATTTCCTGAGGAGTCCTTCATAGATCATACTGAGGAGCACCATTATTGCTTTAAAGACACTAATAACTCTTTATCAGAAAGGGGACATAACGTTCATACCTGCACATCAGATAGAAGTAGCTATTGTAAATCTGAGGAAACTAATATTATAGAAGGTGTTGAAGTTGAACGGTCTGTAGCATATTCCCTTGTTGATGGTTGGCCAATGTCAGATGACTCTGAGCGTGCAAAACTTCTTGAGAAAATTCATGCAGTATTTGATATGCTTATTAGACACAAATACCTTGCTACCAGTCATCTTAGCAAGGTCATACAATTTACCATGGATGAGATACAGGGACTTGTTGCTGGATCTCAGCTTCTGAACCATGGAATTACTACTGGTGGAACTAAAAATGCTGCACTGGATGATGTGATCGCCCCAACTTCTAATGATATAGTTTTACACAACACCGATCCTTTGCTATCTTGGATATTTTCAGTTCCTATTCTTTTGCGCATGATCATGATTCCATTCTTGGGAGAAGCTGTAGCTCCTACTTCTCTGAGAATAGCTCTAAGCAACCTATGTCCAGATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAAGTACTGGCAGTGATATTTGACTGCCTTCATCGGTCATTTACTCGTGTTTCAAGTGTTTCTGATACAGAATCAGTGGAAAGCAATTCCATGGGATCTGGGGATTGTGCAAACAGTAGTTGTATAGCACATTCACTCTTTGGAATGGACATTTTTGAACGGATGAACTGCCACCACTGTGGTCTCGAGTCCAGACATCTTAAGTACACTTCCTTCTTCCACAATATAAATGCCAACTCCCTTCGGACCATGAAGGGAATGTGTAGTGAAAGCACCTTTGATGAGATTTTGAATCTAGTGGAGATGAATCATCAGTTAGCTTGTGATCCAGAAGCAGACGGCTGTGGCAAGCTAAATTACACCCATCACTTCCTTTCAAAACCACCTCATGTCTTCACAACTGTTCTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATTAAAGCAACTTTGGCAACACTGAGCACCGAGATGGATGTCAGTGTTCTTTATCGTGGGTTAGACCCAAAAAGCATTCATAGCTTGGTTTCAGTGGTGTGCTACTATGGGCAACATTATCATTGCTTTGCTTATAGCCATGAACATGAACAATGGATTATGTATGATGATAAGACCGTCAAGATAATTGGTGGGTGGCCTGAAGTTCTTACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAA 1620 0.4167 MEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQSQNEGDRDEKTLDSSSGTGQRISERRNCSWKPLDASAAVKMLEDQAKCKEFSFPEESFIDHTEEHHYCFKDTNNSLSERGHNVHTCTSDRSSYCKSEETNIIEGVEVERSVAYSLVDGWPMSDDSERAKLLEKIHAVFDMLIRHKYLATSHLSKVIQFTMDEIQGLVAGSQLLNHGITTGGTKNAALDDVIAPTSNDIVLHNTDPLLSWIFSVPILLRMIMIPFLGEAVAPTSLRIALSNLCPDSNFFQEAQMNDASEVLAVIFDCLHRSFTRVSSVSDTESVESNSMGSGDCANSSCIAHSLFGMDIFERMNCHHCGLESRHLKYTSFFHNINANSLRTMKGMCSESTFDEILNLVEMNHQLACDPEADGCGKLNYTHHFLSKPPHVFTTVLGWQNTCESADDIKATLATLSTEMDVSVLYRGLDPKSIHSLVSVVCYYGQHYHCFAYSHEHEQWIMYDDKTVKIIGGWPEVLTMCERGHLQPQVLFFEAVN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0576 539 SUPERFAMILY Cysteine proteinases 246 536 IPR038765 -
Lele19g0576 539 PANTHER UBIQUITIN SPECIFIC PROTEINASE 73 224 - -
Lele19g0576 539 Pfam Ubiquitin carboxyl-terminal hydrolase 272 514 IPR001394 GO:0004843|GO:0016579
Lele19g0576 539 MobiDBLite consensus disorder prediction 1 32 - -
Lele19g0576 539 CDD Peptidase_C19 297 536 - -
Lele19g0576 539 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 226 538 IPR028889 -
Lele19g0576 539 MobiDBLite consensus disorder prediction 1 73 - -
Lele19g0576 539 Pfam Protein of unknown function (DUF629) 73 224 IPR006865 -
Lele19g0576 539 Gene3D Cysteine proteinases 251 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0576 Lele-ChrLele19 3312430 3319393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0576 1 72 C2H2 Transcription Factor Family AT3G47890 62.500 1.04e-16 82.0