Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0574 ATGGACCTTCTTGCGCCGGATAAGGATGAGAATCTTAAACATGACGCGTCGGATTTTGTCTCCCGAGTTCGACTCGTCCATGCTCCTATACTCTTATTTGTTTGCTTCCACGAGGCTCTGCGCGGAGAACTCAACGAGCTCCGGAGCTTGGCGGAAACGTCGTCGCTGGAGAATGCACCGCACAACCCCGAGCTTATTCTCAAACTTCAACGAAGATTCGAGTTTCTCAAACTAGTTCTCAAGTATCATTGCGTCGCGGAAGACGAGGTTATCTTCCCTGCATTGGATGTACATGTAAAAAATGTGGTATGTACTTATTCCCTTGAACATAATAGCACCGATGAAGCCTTCAACTCAATCTTTCACTATTTAGATGAGTTGATGGATCCAAATAAGAATATTTCCAAGCTGTTTGAAGAACTTATATGCTGCATTGGAATCTTGCAAGCCACCACATTCCAGCATATGCAGAAGGAAGAAGAGCAGGTTTTTCCTCTCTTAATGCAGAAAGTTTCTATCGAAGAACAGGCTTTGCTGGTCTGGCAATTCATATGCAGTATTCCTATAATGTTGCTTCAGGAAATTTTGCCATGGATGGTATCATTCCTTTCTGCAGACAAACAAGTAGAAGTTCGAAAGTTTTTAAACGAAATTACACCAATGGAGAAAGAACTGCAAGAGGTTTTGATTGCTTGGCTTGGTGGCAACACCCAAATCTTCACCGAGGACTGTTCTCTGAATGAAGTTGATCGATATGCTGACGGATTCCCACATATGAAAGGACCACGCGTGTTGAGTTATTGCAATAGGAATTTTAAAGCCCTTTCAAATCAGATGAAAGCAAATTGTTCAGATGTAGAAGATAGAGCCAATGAAGTTGATGTTCTTTATCTTTGGCATAATGCCATCAAGAAAGATATGAAAGAAATGTTAGAAGAACTTCATCAAATCAGAAAAAACACTTGTTTTCATAATTTGGATTCTTTACTTATCCAACTAAAATTCTTTGCTGAAGTTCTCGTCTTCTACAGCAATGCGCAGAAGAAATTCTTTTACCCAGTTTTGAGTGAACTTGCTTATGGCTTGTTGACCAAGTCTAGTGAACAATTTATTCGTGAAAGTCATATTGAAGATTTACAGCACTTGCTGTTGTATAATGCTGAAAGCGTTATGCCTTTGTCTGAATTTGTGGAGAAGCTTTGCAGAGACCTTGACCTATTTATGACACGAATCAACAAGCAATTTGATTTTCAAGAAACTGAGATATTTCCTGTCATTCGCTTGAATCGCAACAATGAAATGCTAGAGGAACTCATCAGCTTGTGCCTGCACATGATGCCACTTGGGTTGCTGAAATGCGTGATAACTTGGTTCTCAGGTCACTTATCTGAAAATGAATCTAGATCCATTCTCAGTGCCATGAAACAAGGAAATCCTTTTCTCCATGAACCTTTTGCATCACTAGTACATGAGTGGTTCCGTGTCGGTTATTCTGGTAAAATTTCTACCGAAAAATTCCGACAAAACTTGCGACATATTTTTAAAAGCAAAAACTCTTTGTTAACTGAGCAAGTCAAGGAAGCTCCCGGGTTTTCTTTCTTGAATTATGACAAGCCTCACAAAGGATCAGTTGGAAATAATGGTCTGTCTTCTTCATCATCTTCTGGATTCAACAATGTGACCAAGTATGAGACGCCATACTCTACGGGAATTAATATGCATATATTTTTTCCTGCCACAGCTATGAAGTTAAATCACCGTTCCATATTTCAGGCAGCTGATAGTTCTTGTGCTCCCTTTCTTGATGATTCAAAACCTATTGACCTTATATTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGATTACCTTGTTCTTGGATCATCTCAGATAGAAAAAAATGTTGAGACGCTTGTGAATTTCAGCAAAAGATTTCATCTAATATGCTTTCTTCATCGAATCCATAGTGAGACAGAGGATGAGATAGCATTCCCAGCCTTAGAGGCAATGGGTAAAGTGAAAAATATTAGCCTCTCTTATACGATTGATCACAAATTTGAAGTTGAACACTTCAACAAAATATCCTGCATCCTTGATAAGATGTTCGATCTACATTTTTCAGTTTCCAGCTTTGAAACAAATACATGGGAGCAGAGAATGCTAATGCATCATCAGCTGTGCAGAAAGCTGCAGGAAATGTGCAAATCAATGCATAAACTACTTTCTGACCATATGAATCGTGAAGAAATTGAAATTTGGCATTTAATTAGAGAATTCTTCTCCAATAAGGAGCAAATAAAGATCGTAGGGTGCATGCTTGGAAGAATTAGAGCAGAAATATTGCAAGATATGATACCCTGGTTAATGACATCTTTAACCCCAGAGGAACAGCATGTTTTAATGTTCTTATGGTCCATGATTGCCAAAAATACAATGTTTGATGAATGGCTAGCTGAATGGTGGGATGGATACAGGATAAGAAAGGAGATAGAAAGATCAAATGATCCTCCTCTGCAGACTGTTGAGCCGTTGGAGATCATATCTAAATATTTATCTAAAGAAGTTCTCGATGAACTCCAAGAAGAATCCTCTTCCAACAAAAGCGAATCTTCTTCACAGAGGGATCATGTTGGTGATAATAATGAGCAGTCTCACAATTGCAATCGTCATGGCAAATCCCAGGTTCTTAAGGCAAAGAAGATTAGTAGTGAATGTTCAGAATGCAGAAACCAATTGAGTGATAATAACAAAACATGCACTAAAGTAACAGATATCACAAGTCCGATCAATGATAAAGGTCAGTCTCTTCAATTCGGTGAAAACTCTGGGCACTATGACCATCTTATGAAAATAAGTCCAGATGATCTGGAGATTGCCATAAGAAGGATATCTCGTGACTCTTCCTTAGATCTGCAGAAGAAGTCATACATAATCCAGAATCTGCTGATGAGCCGTTGGATTGTTAAACAGCATATCTCTTGTTCAGAAGGCACTGTCACAAACAATGGGCAGCAATTTCCTGGGCAGTATCCGTCTTACAGGGACCCTCTCAACGTAATCTATGGCTGCAAACACTACAAGAGAAGCTGTAAGCTTTTAGCTTCCTGTTGCAACCAACTTTATACATGCATTCATTGCCATAATGATGCATCAGATCATTTACTTGACAGGAAATCTATTACAAAGATGATGTGCATGAAATGCTTGAAGATTCAGCCAATCGGTGCCACATGTTCCACTGTATCTTGCGGTAACTTACCCATGGCAAAATACTACTGCAGGATCTGTAGGTTGTTCGATGATGAAAGGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGAGTTGGAAAGGGCTTGGGCTTAGACTACTTTCATTGTATGAATTGCAATGCTTGTATGTCTCGTTCCCTTACAGTACATATATGCAGAGAGAAATCTTTAGAGGACAACTGCCCAATTTGTCATGAATACATCTTTACGTCCTGCTCTCCAGTAAAGGCCCTTCAATGCGGTCATGTCATGCACTCAACATGTTTTCAGGAGTATACCTACTTCAATTATACATGTCCAATATGTTACAAGTCACTTGGAGACATGCAGGTGTATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAAAATGCCAGACGAGCATTTGGGTCAAACTCAGATGATACTATGCCATGACTGTGAAAAGAAAGGAACAGCTCCATTCCACTGGCTTTACCACAAATGCTCTTCTTGCGGGTCCTACAACACCAGAGTTATATGA 3777 0.3942 MDLLAPDKDENLKHDASDFVSRVRLVHAPILLFVCFHEALRGELNELRSLAETSSLENAPHNPELILKLQRRFEFLKLVLKYHCVAEDEVIFPALDVHVKNVVCTYSLEHNSTDEAFNSIFHYLDELMDPNKNISKLFEELICCIGILQATTFQHMQKEEEQVFPLLMQKVSIEEQALLVWQFICSIPIMLLQEILPWMVSFLSADKQVEVRKFLNEITPMEKELQEVLIAWLGGNTQIFTEDCSLNEVDRYADGFPHMKGPRVLSYCNRNFKALSNQMKANCSDVEDRANEVDVLYLWHNAIKKDMKEMLEELHQIRKNTCFHNLDSLLIQLKFFAEVLVFYSNAQKKFFYPVLSELAYGLLTKSSEQFIRESHIEDLQHLLLYNAESVMPLSEFVEKLCRDLDLFMTRINKQFDFQETEIFPVIRLNRNNEMLEELISLCLHMMPLGLLKCVITWFSGHLSENESRSILSAMKQGNPFLHEPFASLVHEWFRVGYSGKISTEKFRQNLRHIFKSKNSLLTEQVKEAPGFSFLNYDKPHKGSVGNNGLSSSSSSGFNNVTKYETPYSTGINMHIFFPATAMKLNHRSIFQAADSSCAPFLDDSKPIDLIFFFHKAIKKDLDYLVLGSSQIEKNVETLVNFSKRFHLICFLHRIHSETEDEIAFPALEAMGKVKNISLSYTIDHKFEVEHFNKISCILDKMFDLHFSVSSFETNTWEQRMLMHHQLCRKLQEMCKSMHKLLSDHMNREEIEIWHLIREFFSNKEQIKIVGCMLGRIRAEILQDMIPWLMTSLTPEEQHVLMFLWSMIAKNTMFDEWLAEWWDGYRIRKEIERSNDPPLQTVEPLEIISKYLSKEVLDELQEESSSNKSESSSQRDHVGDNNEQSHNCNRHGKSQVLKAKKISSECSECRNQLSDNNKTCTKVTDITSPINDKGQSLQFGENSGHYDHLMKISPDDLEIAIRRISRDSSLDLQKKSYIIQNLLMSRWIVKQHISCSEGTVTNNGQQFPGQYPSYRDPLNVIYGCKHYKRSCKLLASCCNQLYTCIHCHNDASDHLLDRKSITKMMCMKCLKIQPIGATCSTVSCGNLPMAKYYCRICRLFDDEREIYHCPYCNLCRVGKGLGLDYFHCMNCNACMSRSLTVHICREKSLEDNCPICHEYIFTSCSPVKALQCGHVMHSTCFQEYTYFNYTCPICYKSLGDMQVYFRMLDALLAEEKMPDEHLGQTQMILCHDCEKKGTAPFHWLYHKCSSCGSYNTRVI 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0574 1258 CDD Hr-like 608 753 - -
Lele19g0574 1258 Coils Coil 300 320 - -
Lele19g0574 1258 Pfam CHY zinc finger 1023 1098 IPR008913 GO:0008270
Lele19g0574 1258 MobiDBLite consensus disorder prediction 858 893 - -
Lele19g0574 1258 CDD RING-H2_Pirh2 1151 1194 - -
Lele19g0574 1258 Pfam Hemerythrin HHE cation binding domain 37 167 IPR012312 -
Lele19g0574 1258 SUPERFAMILY CHY zinc finger-like 1014 1079 IPR037274 GO:0008270
Lele19g0574 1258 Gene3D - 1223 1258 - -
Lele19g0574 1258 FunFam Zinc finger protein-related isoform 1 1147 1196 - -
Lele19g0574 1258 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 651 1258 - -
Lele19g0574 1258 ProSiteProfiles Zinc finger CTCHY-type profile. 1088 1151 IPR017921 -
Lele19g0574 1258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1145 1195 IPR013083 -
Lele19g0574 1258 ProSiteProfiles Zinc finger CHY-type profile. 1016 1085 IPR008913 GO:0008270
Lele19g0574 1258 Gene3D nmb1532 protein domain like 604 774 - -
Lele19g0574 1258 Gene3D nmb1532 protein domain like 288 442 - -
Lele19g0574 1258 Gene3D nmb1532 protein domain like 28 185 - -
Lele19g0574 1258 MobiDBLite consensus disorder prediction 858 886 - -
Lele19g0574 1258 CDD Hr-like 36 165 - -
Lele19g0574 1258 ProSiteProfiles Zinc finger RING-type profile. 1152 1193 IPR001841 -
Lele19g0574 1258 SMART ring_2 1152 1193 IPR001841 -
Lele19g0574 1258 Pfam Ring finger domain 1150 1193 IPR001841 -
Lele19g0574 1258 Pfam Zinc-ribbon 1199 1256 IPR039512 -
Lele19g0574 1258 SUPERFAMILY RING/U-box 1139 1198 - -
Lele19g0574 1258 SUPERFAMILY Zinc hairpin stack 1089 1143 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0574 Lele-ChrLele19 3297018 3305991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0574 28 849 C2H2 Transcription Factor Family AT3G18290 32.251 4.32e-120 401