Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0566 ATGGATCCTCCTCTCATCAACGAGTCCACATTCTCCCACGCTAATCCTTCATCCTATAGTCTCGCCGAGATTTGGCCTTTCCCTGGGGACCACCCTCCCGGACCTGGATTGGGCCTCCGAATGCCCCATTTAGGTCACAATTTGCCCTCCTTTCCCGTAGATGGCTCCGCCGAGGAGTCAACCGTCACGGGGCAGAGCGTCGGCGGCGCCGGAGGAAATCACAGGAAGAGGAAAGATGCCACGTCTGAGGACGAATCCTCAAAGATGGTTTCCATGATTAGTGCCAATGATTTGAATGATTCTGGAAATAAACGGATAAAATTAGGAGTATCCAAGCATGAAAATGGTGGTCTGAAGGCTGAAGCAGAAGCAAGTTCAGTAGCTGGTAGCAAGTCAGCTGAACAAAGTACTAAACCTCCTGAGCCACCTAAGCCTGACTATATACACGTGAGAGCAAGAAGAGGCCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCAAGAAGGGAAAAGATCAGCGAGAGGATGAAAATTCTACAAGATTTGGTCCCTGGATGTAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATTAATTATATTCAATCACTGCAGCGGCAGGTTGAGTTCCTTTCGATGAAGCTCGAAGCAGTTAATTCGAGAATGAACATGAACCCAACCATTGAAGGGTTCCCTTCAAAAGATCTTGGTGCTCAGACACTTGACGTTGCTGGAATGATATTTGGATCACAAGCAGGCAGGACATATGCTCAGGGAACACAACTTGGATGGCTGCAAATGCAGATTGGTGGTGGTGGTGGTTTCGAGAGAGCAACATAG 846 0.4787 MDPPLINESTFSHANPSSYSLAEIWPFPGDHPPGPGLGLRMPHLGHNLPSFPVDGSAEESTVTGQSVGGAGGNHRKRKDATSEDESSKMVSMISANDLNDSGNKRIKLGVSKHENGGLKAEAEASSVAGSKSAEQSTKPPEPPKPDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMNPTIEGFPSKDLGAQTLDVAGMIFGSQAGRTYAQGTQLGWLQMQIGGGGGFERAT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0566 281 FunFam Basic helix-loop-helix transcription factor 153 226 - -
Lele19g0566 281 MobiDBLite consensus disorder prediction 54 68 - -
Lele19g0566 281 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Lele19g0566 281 Coils Coil 203 223 - -
Lele19g0566 281 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 249 IPR024097 GO:0006355
Lele19g0566 281 MobiDBLite consensus disorder prediction 112 147 - -
Lele19g0566 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983
Lele19g0566 281 SMART finulus 162 212 IPR011598 GO:0046983
Lele19g0566 281 CDD bHLH_AtBPE_like 146 229 - -
Lele19g0566 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 226 IPR036638 GO:0046983
Lele19g0566 281 Gene3D - 153 230 IPR036638 GO:0046983
Lele19g0566 281 MobiDBLite consensus disorder prediction 27 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0566 Lele-ChrLele19 3247579 3250319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0566 1 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 55.631 1.69e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele19g0566 HLH 2.3e-08 No_clan