Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0562 ATGTCTCGCACGTATGCTGCCGCCGATACCGCCGTAAGCGCCGATGGTGATGGTTCCACCGGAGAGATCATGCTGTTTGGGGTTAGAGTCGTGGTCGATTCCATGAGGAAGAGCGTGAGTATGAATAATCTCTCTCAGTACGAGCATCCTCAGGACGCCGCAAACAACAATAACGGCAGCAAGGAAGATGCTCTGGCTGCCGGTTATGCCTCCGCCGATGAAGCTGCTGCTCATAATTCTGGCAGGCATCGCGAGCGTGAGCGTAAACGAGGAGTTCCTTGGACAGAGGAAGAGCACAAGCTGTTCTTGCTGGGATTGCAGAAAGTTGGGAAAGGTGATTGGAGAGGGATCTCAAGAAACTACGTGAAAACTCGGACGCCTACACAGGTTGCGAGCCATGCTCAGAAGTACTTTCTCCGGCGAACAAATATCAACCGCCGACGCCGCAGATCCAGCCTTTTCGATATCACCACTGACACGGTCTCTGCAATCCCAATGGAAGAAGAACAGATCCAGCATCAAGATTATGCACTGTCTCATTCGAATCCTGTTGTATGCCCTGCAACCCCTGAAACAACCAACATAAATGGATTTTCAATGATGCAAGTATATCCAATGGGAGTTGGTTCTGGAATGATTTCAGTCCCAGTTTCAAATCCAATAGGAACGATGGACGATAACGGGCAACCCCACCAGCTAGTCCGATCAATCACTGTTCTTTCACATCCTCAAGCTTCTGAAGCGTCTAATGTCACATCAAGTTCAAGTTCAGCTGTTGATCCACCAACATTGTCTCTCAGGTTATCCTTGTCTTCTGATCAAAGACACACTTCAACAAGGCATTCATCTATGCTTGCCATGCCGTGTTTCAACAATGGAGATAACATCATAAGTGTTGCTTGA 903 0.4839 MSRTYAAADTAVSADGDGSTGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDAANNNNGSKEDALAAGYASADEAAAHNSGRHRERERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNINRRRRRSSLFDITTDTVSAIPMEEEQIQHQDYALSHSNPVVCPATPETTNINGFSMMQVYPMGVGSGMISVPVSNPIGTMDDNGQPHQLVRSITVLSHPQASEASNVTSSSSSAVDPPTLSLRLSLSSDQRHTSTRHSSMLAMPCFNNGDNIISVA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0562 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Lele19g0562 300 SMART sant 90 140 IPR001005 -
Lele19g0562 300 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Lele19g0562 300 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Lele19g0562 300 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Lele19g0562 300 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Lele19g0562 300 MobiDBLite consensus disorder prediction 244 263 - -
Lele19g0562 300 PANTHER TRANSCRIPTION FACTOR KUA1 18 247 - -
Lele19g0562 300 MobiDBLite consensus disorder prediction 72 92 - -
Lele19g0562 300 FunFam transcription factor MYB1R1 92 143 - -
Lele19g0562 300 Gene3D - 92 144 - -
Lele19g0562 300 CDD SANT 93 138 IPR001005 -
Lele19g0562 300 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
Lele19g0562 300 MobiDBLite consensus disorder prediction 77 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0562 Lele-ChrLele19 3234602 3236255 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele19g0562 Myb_DNA-binding 1.6e-11 CL0123