Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0555 ATGTCTACCCCTAGTCATGCAATCGCAACGGCTGTGGCTGTTACTGCAACTGTTATGTTGTTACTTTCAGGGGTTTTGTTTTACTTGTTCTATAAGTTTATTCTATGTCGGTACAACCAAAGGCACAAGGTTGCTGCTGCTATTCTGCGTGATAAAGGGGTGAAACATCAGGACATTGAGAAAGTTAGTGGCAAAGTGAAAGGATTGGTCGTTGAAAAAGATGGAATCCACATTCTTTACATGTTGGAACCAGATGGTAGACCAGTGAGAAGTAGATTCCCAAAATGTTGGTTTAATCCAAGTTATGAAAATTCTGAAGAATTCATGAAAATTAACGTCAGGCCAGTTTCTTCCCCAGTACCTACTCTGCCTTCTTCAGTTTCTGCATCATCACCTCTAAAGGCTCCTCCTTCTCCACCGCCACCTCCTCCTCCTCCTCCACCACCACGGCCACCACCTCCACCAAGAAAGGATATCACAAAGGTGCCACCTAAGCCTCCATTGCTACCACCTACACCTCCAAAGGCATCATTGAGACCCCCACCTGCACCTAAAGGGAAAGCAAACATGCAGAACAAGAGTTCGAGTGAGAAAGATGGCGACACAAAAAAGTTGAAGCCTCTTCACTGGGATAAGGTTGCAGCCAATGTTGATCATTCAACAGTGTGGGATCAGATCAATGATGGCTCTTTCTTATTTGATGATCAACTCATTGTGAAACTATTTGGATATTCAAGCAACAACAAAACCCAAGAAAGATACATGAGTCTCTCAACTACTTCCAACTCCATTTCCCCACCTCAAATATTCATTCTGGAGCCTAGAAAATCCCAGAACACTGCGATTGTGCTCAAGTCTTTAGCAATTTCTCGTGATGAAATCTTAGAAGCACTCCTCGATGGCCAAGGACTCGGTGCTGACACACTTGAAAGACTCACAAGATTAGCTCCAACTCAAGAAGAAGCAGCCAAAATCATCAATTTCAATGGCGACACAGATAAACTAGCAGATGCAGAGTCTTCCCTTTACCACATCCTCAAAGCAGTACCAACAGCATTCCCTCGTTTGAAAGCAATGCTTTTCAGATCAAACTATGATTCTGAAGCACTTCAACTTAAAGAAAATCTGGGAACACTAGAAATGGGATGTAAGGAGCTGAGGATTAGTGGTCTCTTTAGAAAACTCCTAGAAGCCATTCTCAAAGCTGGGAACCGAATGAATGCTGGAACTTCAAGAGGCAATGCACAAGGTTTCAACTTAAACTCTCTTAGCAAGCTTTCTGACGTGAAAAGTACAGATGGTAAGACCTGTTTGCTTCACTTCATCGTGGAACAAGTGGTTCAGTCAGAAGGAAGAAGAGAAGCTATGCATCAGAAGCAGAAGAACCTGACAGACAGAGAATATCTGATTCTTGGCTTACCAGTTCTAAGAGGGCTAAGTGATGAGTTATCTGAAGTAAGAAAAGCAGCAAACATAGAACATCACAGTTTCATCAGTTTGTGTTCAACTTTGCATGATCACGTCACTGAAATTCGCCAGATTATGACATGTTGTAATAACGGTGATGAGAGAGATGGGTTTATTAAGGAAATGAAAGGGTTCTTAGAGGACTGTGAAGAGGAACTGAAGGTGGTGAAAGAAGAAGAGGAAAGGATCATGGAGCTTGTGAAGAAGACGAACGAGTATTATCTAGCCGGAGGAGGATCCAAAGACAGCATGATGTCAAACCCATTTCAGTTGTTCGTTATTGTAGAACAGTTTGTTGACATGGTAGATCTGGCTTGCTTAGAACTCAAGAAGAAGATAGAAAAGAATAAGGTAGGAGGAGGAGTAGAAGCTGTATCATTATCAACATCATCATCACCATCAAAGAAGATGGTGCCACTCAGATTTCCAAACTTAGATTTCCATTTTGTGTCGAATATGTCAGAAGCAACAACATCTTCAAGCCAATCAGAAGATGATTTTTGA 1971 0.4201 MSTPSHAIATAVAVTATVMLLLSGVLFYLFYKFILCRYNQRHKVAAAILRDKGVKHQDIEKVSGKVKGLVVEKDGIHILYMLEPDGRPVRSRFPKCWFNPSYENSEEFMKINVRPVSSPVPTLPSSVSASSPLKAPPSPPPPPPPPPPPRPPPPPRKDITKVPPKPPLLPPTPPKASLRPPPAPKGKANMQNKSSSEKDGDTKKLKPLHWDKVAANVDHSTVWDQINDGSFLFDDQLIVKLFGYSSNNKTQERYMSLSTTSNSISPPQIFILEPRKSQNTAIVLKSLAISRDEILEALLDGQGLGADTLERLTRLAPTQEEAAKIINFNGDTDKLADAESSLYHILKAVPTAFPRLKAMLFRSNYDSEALQLKENLGTLEMGCKELRISGLFRKLLEAILKAGNRMNAGTSRGNAQGFNLNSLSKLSDVKSTDGKTCLLHFIVEQVVQSEGRREAMHQKQKNLTDREYLILGLPVLRGLSDELSEVRKAANIEHHSFISLCSTLHDHVTEIRQIMTCCNNGDERDGFIKEMKGFLEDCEEELKVVKEEEERIMELVKKTNEYYLAGGGSKDSMMSNPFQLFVIVEQFVDMVDLACLELKKKIEKNKVGGGVEAVSLSTSSSPSKKMVPLRFPNLDFHFVSNMSEATTSSSQSEDDF 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0555 656 MobiDBLite consensus disorder prediction 119 207 - -
Lele19g0555 656 ProSiteProfiles Formin homology-2 (FH2) domain profile. 195 617 IPR015425 -
Lele19g0555 656 Gene3D Formin, FH2 domain 203 607 IPR042201 -
Lele19g0555 656 PANTHER FORMIN-RELATED 4 622 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lele19g0555 656 SMART it6_source 195 606 IPR015425 -
Lele19g0555 656 MobiDBLite consensus disorder prediction 133 181 - -
Lele19g0555 656 MobiDBLite consensus disorder prediction 192 207 - -
Lele19g0555 656 Coils Coil 528 558 - -
Lele19g0555 656 SUPERFAMILY Formin homology 2 domain (FH2 domain) 145 606 - -
Lele19g0555 656 Pfam Formin Homology 2 Domain 198 591 IPR015425 -
Lele19g0555 656 PRINTS Vinculin signature 132 142 - -
Lele19g0555 656 PRINTS Vinculin signature 147 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0555 Lele-ChrLele19 3199480 3201549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0555 8 653 FH2 protein (formin) Gene Family AT1G70140 38.873 2.57e-147 444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0555 19 3199480 3201549 Lele21g1843 21 25937817 25943704 CCT
Lele19g0555 19 3199480 3201549 Lele22g1817 22 23249165 23252335 CCT
Lele19g0555 19 3199480 3201549 Lele23g0169 23 1069444 1072858 CCT
Lele19g0555 19 3199480 3201549 Lele24g1772 24 22896136 22901242 CCT
Lele17g1004 17 20811792 20815073 Lele19g0555 19 3199480 3201549 hybridization
Lele18g0531 18 3131485 3136356 Lele19g0555 19 3199480 3201549 hybridization