Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0554 ATGGGTAGCGATGTTTTCCGGCTAGAGGACCCGCCTTGTTGCAGTTCCGGTGAGCTGCATGTTCTTGCCGTCGATGACAGTTATGTTGATCGCAAGGTCATTGAGCGCTTGCTGAAAATCTCTTCTTTTAAAGTGACAGTTGTGGAGAGTGGAACTAGAGCTCTTGAATATCTGGGATTGGGTGGACAGAAGAGCTCCATTGGATTTGAGAGTGTCAAGGTTAATCTGATAATGACGGACTATTCAATGCCTGGGATGACAGGATATGAGCTGCTCAAGAAGATCAAGGAATCGTCCAGTTTTAGAGAGATTCCAGTAGTGATCATGTCATCTGAGAATATCCTGACTCGAATTGATAGATGCTTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCAGTGAAGTTGGCAGATGTTAAACGATTAAAAGAATTCATAGTGAAGAGTGAAGTAAAGGAAAGTGGGGAGAGAGAATCTCACAAAAGAAAGAGATCAGATGATGATTGTAGTGAACTTCTACCAACTCCATTCTCATATCTGTCTTGTCCTTGTGAATCATCATCTTCTTCACCATCTGCATTGTCCTCCAAGAAGCCTAGATTGCTAGCAGAAGTTGAATGA 621 0.4316 MGSDVFRLEDPPCCSSGELHVLAVDDSYVDRKVIERLLKISSFKVTVVESGTRALEYLGLGGQKSSIGFESVKVNLIMTDYSMPGMTGYELLKKIKESSSFREIPVVIMSSENILTRIDRCLEEGAEEFLLKPVKLADVKRLKEFIVKSEVKESGERESHKRKRSDDDCSELLPTPFSYLSCPCESSSSSPSALSSKKPRLLAEVE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0554 206 CDD REC_typeA_ARR 21 142 - -
Lele19g0554 206 SMART REC_2 19 143 IPR001789 GO:0000160
Lele19g0554 206 MobiDBLite consensus disorder prediction 180 196 - -
Lele19g0554 206 MobiDBLite consensus disorder prediction 153 206 - -
Lele19g0554 206 ProSiteProfiles Response regulatory domain profile. 20 147 IPR001789 GO:0000160
Lele19g0554 206 SUPERFAMILY CheY-like 18 144 IPR011006 -
Lele19g0554 206 MobiDBLite consensus disorder prediction 153 170 - -
Lele19g0554 206 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 203 IPR045279 GO:0009736
Lele19g0554 206 Pfam Response regulator receiver domain 21 139 IPR001789 GO:0000160
Lele19g0554 206 Gene3D - 19 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0554 Lele-ChrLele19 3195793 3197279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0554 19 168 Response Regulator Gene Family AT3G48100 74.172 8.58e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele19g0554 Response_reg 4.3e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0554 19 3195793 3197279 Lele21g1842 21 25929226 25934604 CCT
Lele19g0554 19 3195793 3197279 Lele22g1815 22 23242849 23246144 CCT
Lele19g0554 19 3195793 3197279 Lele24g1771 24 22886616 22892017 CCT
Lele17g1005 17 20815592 20817077 Lele19g0554 19 3195793 3197279 hybridization