Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0549 ATGGCGATCCCAGTGCCCAACCGATTGTTGTTCATTGATGGCGAGTGGAAAGAGCCAGTTCTCAAGAAACGAATTCCCATTATCAACCCCTCCACTGAGGAAAAAATTGGTGATATTCCGGCTGCCACTTCGGAAGATGTGGAGCTTGCAGTGGCTGCTGCCAGAAGAGCCCTCACCCGGAACAAAGGCTCGGATTGGTCAACGGCTTCCGGGTCGGTTCGGGCTCGCTATCTGCGAGCTATTGCTGATAAGGTTAAAGATAGAAAGGATGAACTAGCAAAACTCGAAGCACTAGACTGTGGAAAACCGCTAGAAGAAGCAGCGTGGGACATTGATGATGTTGCTGGCTGCTTTGAGTACTATGCTGACCTTGCTGAAGGTTTGGATGCAAAGCAAAAGGCTCCTGTATCTCTTCCCATGGACACCTTCAAGTCTTATGTTCTTCATGAGCCCATTGGGGTTGTAGGATTAATTACTCCCTGGAATTATCCTATGTTAATGGCTACATGGAAGGTTGCTCCAGCCCTGGCTGCTGGTTGTACTGCAATATTAAAGCCTTCCGAATTGGCATCCATAACCTGTTTGGAGCTGGCTGATATCATTAGAGAAGTGGGCCTTCCTCCAGGTGTCTTAAATATTCTCACTGGATTCGGCCATGAAGCTGGTGCTCCTTTGGCATCCCATCCTCATGTAGACAAGATTGCCTTTACTGGAAGCTCTGTAACCGGGAGCAAGATTATGACAGCTGCAGCTCAACTGTTGAAGCCTGTTTCACTAGAGCTTGGTGGGAAAAGCCCACTCATTGTTTTTGAGGATGTTGACCTAGATAAGGCTGCTGAATGGGCCATCTTTGGCTGCTTCTGGACAAATGGTCAAATATGCAGTGCAACATCCCGTCTTATTGTACATGAACGCATAGCGACAGAATTTCTGAATAGAATGGTGAAGTGGATAAAAAATATCAAAATTTCAGATCCCTTGGAAGAAGGTTGCAGGCTAGGCCCTATTGTCAGTGAGGGACAGTATGAAAAGATATTGAAGTTTGTTGAAACTGCCAAAAGAGAGGGTGCAACAATTTTGACTGGTGGGTCCCGCCCTGAGCATTTAAAGAAGGGATTTTTTGTTGAACCAACTGTTATAATTGATGTGACAACCTCCATGCAAATTTGGAGAGAGGAAGTTTTTGGACCTGTTCTCGCTGTGAAAACCTTTAGTAATGAGGAAGAAGCTATTGAGCTAGCAAATGACACCCATTATGGATTAGGCGCAGCTGTAATATCTAATGATCTAGAAAGATGTGAGCGTGTAACCAAGGCTTTCCAGGCTGGGATTGTTTGGATCAATTGTTCTCAGCCATGCTTCACTCAAGCCCCATGGGGAGGCAAAAAACGTAGTGGCTTTGGTCGGGAATTAGGAGAATGGGGCCTTAATAACTACTTGAACGTGAAGCAAGTCACACAGTACATCTCTGATGAACCATGGGGCTGGTACCAGAATCCTTCGAAGCTGTGA 1512 0.4597 MAIPVPNRLLFIDGEWKEPVLKKRIPIINPSTEEKIGDIPAATSEDVELAVAAARRALTRNKGSDWSTASGSVRARYLRAIADKVKDRKDELAKLEALDCGKPLEEAAWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMDTFKSYVLHEPIGVVGLITPWNYPMLMATWKVAPALAAGCTAILKPSELASITCLELADIIREVGLPPGVLNILTGFGHEAGAPLASHPHVDKIAFTGSSVTGSKIMTAAAQLLKPVSLELGGKSPLIVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLIVHERIATEFLNRMVKWIKNIKISDPLEEGCRLGPIVSEGQYEKILKFVETAKREGATILTGGSRPEHLKKGFFVEPTVIIDVTTSMQIWREEVFGPVLAVKTFSNEEEAIELANDTHYGLGAAVISNDLERCERVTKAFQAGIVWINCSQPCFTQAPWGGKKRSGFGRELGEWGLNNYLNVKQVTQYISDEPWGWYQNPSKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0549 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 276 - -
Lele19g0549 503 Pfam Aldehyde dehydrogenase family 21 485 IPR015590 GO:0016491
Lele19g0549 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Lele19g0549 503 Coils Coil 78 98 - -
Lele19g0549 503 CDD ALDH_F10_BADH 27 487 - -
Lele19g0549 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Lele19g0549 503 PANTHER ALDEHYDE DEHYDROGENASE 5 502 - -
Lele19g0549 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Lele19g0549 503 SUPERFAMILY ALDH-like 7 489 IPR016161 GO:0016491
Lele19g0549 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Lele19g0549 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0549 Lele-ChrLele19 3179945 3184203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0549 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.437 0.0 872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1826 21 25837962 25839513 Lele19g0549 19 3179945 3184203 CCT
Lele22g1801 22 23149870 23151398 Lele19g0549 19 3179945 3184203 CCT
Lele23g0183 23 1171059 1172473 Lele19g0549 19 3179945 3184203 CCT
Lele24g1763 24 22808255 22809785 Lele19g0549 19 3179945 3184203 CCT
Lele17g1009 17 20828400 20835102 Lele19g0549 19 3179945 3184203 hybridization
Lele18g0528 18 3116616 3120832 Lele19g0549 19 3179945 3184203 hybridization