Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0544 ATGGGCGGCAATGGCAGGCACAGGTGGAAAATCTCTTTCCATCGTAACCCCTCAAGCTCCAAGCTCCCATCACAAGAGCCCCCCGTCGAGTTTCTATGCCCAATTTCTGGGTCTCTGATAGCGGAACCCGTCGTAGTCGCTTCCGGTCACACTTTTGAATCGATTTCTGTTCAAGTCTGCAGAGACTTGTGTTTCTCCCCCAAGCTTGAAGACGGGTCCACACCAGATTTCTCCGCGGCGATTCCGAATTTGGCTCTCAAATCCACCATATCCAATTGGTGCGTTAAATCCGGTGTAGAGAACCCTCGCCCGCCAGAGTATAGCTCCGTCGAGAGGATCGTCCGTACAGCTATGACGTCTCCGCGCGAAAACCAAGCGTCAGGTTTAAGGGCTTCTGATAGTGAATTGCTCATGGCCGTGCCTGATAATCCCCCGGTCATTTTCTCTCACGCCGCCACGGAGTTGGGTCCCCGGGTCAACCCATTTAAAACGAGTTGGTCCGAGTCGGCTATCCCCGCGGGGTGTCCGGAGACTCCTTTGCCACTCGCGACTCGTCCCACATGTTACTCGTCTTCGTCTTCTTCTGTCGAAATTAACGAGAATGAACGCCAAAACCAGAACCCTATCGGTCCAATTTCCGAGGAAGAGGAGAAATTAGTGCTCAAGCTGAGGAGCGACGACGCTTCTGAGCAGGAAGAAGCGGTTGTTTCGCTCAGAAACATCACCAAGACGAGAGAGGACACCAGAATTTCTCTTTGCACGCCTGCGTTACTCTCATCACTCCGATCACTGATCCCGTCGAAGCATTCCGTCGTGCAAGTAAACGCCGTGGCTTCGCTGGTTAATTTCTCCCTCGATAAATCTAACAAAGTGAAAATCGTTAGGTCTGGATTTATCCCTTCCCTCATTCAAGTCTTGAAAAGTGGATACCCCGAGGCGCAGGAACACGCAGCGGGAGCACTATTCAGCCTGGCCTTAGACGACGAGAACAAAATGGCAATCGGCGTTTTGGGCGCTTTGGAGCCACTCATGAACGCGTTGGATTCCGAGTCGGAACGGACTCGGCACGACTCGGCGCTCGCGTTGTACCACCTGACCTTGGTACAGAGCAACAGGGTGAAGCTGGTGAAGCTCGGGGTGGTACCAACGTTGCTATCCATGGTGAAATCGGGGGATTTGGCGAGCCGTGTCTTGCTGATTCTGTGTAATATTGCGGCGGGAATGGAGGGTCGAACGGCGATGCTGGACGCGAATGCGGTGGAGTGCTTGGTGGGTGTGCTGAGGGAGATGAAGGGAGCGGAGGCGAAAGCGACGGGGGAACACTGTGTGGCGGCGCTGTATGGAATGAGCCATGGGAGCTTGAGGTTCAAGGCGTTGGCAAAGGAAGCAAGGGCCGTGGAGGTGTTGAGAGAGGTTGAGGAGAGAGGATCAGAGAGGGCGAGAGAGAAGGCCATGAGGATGTTGCAGATGATGAGAGCTGGAGGAGAAGAGGATGACGAAAATGGCGTCGGTTCGGATGGGGCATTGGACTCGGGTGTGTTGGGTCGAACCCGGTTCCGGGTTGGAGGAGGGAGGAATGCGGACGCGGCTAACACCACCACATTTTAG 1608 0.5454 MGGNGRHRWKISFHRNPSSSKLPSQEPPVEFLCPISGSLIAEPVVVASGHTFESISVQVCRDLCFSPKLEDGSTPDFSAAIPNLALKSTISNWCVKSGVENPRPPEYSSVERIVRTAMTSPRENQASGLRASDSELLMAVPDNPPVIFSHAATELGPRVNPFKTSWSESAIPAGCPETPLPLATRPTCYSSSSSSVEINENERQNQNPIGPISEEEEKLVLKLRSDDASEQEEAVVSLRNITKTREDTRISLCTPALLSSLRSLIPSKHSVVQVNAVASLVNFSLDKSNKVKIVRSGFIPSLIQVLKSGYPEAQEHAAGALFSLALDDENKMAIGVLGALEPLMNALDSESERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVKSGDLASRVLLILCNIAAGMEGRTAMLDANAVECLVGVLREMKGAEAKATGEHCVAALYGMSHGSLRFKALAKEARAVEVLREVEERGSERAREKAMRMLQMMRAGGEEDDENGVGSDGALDSGVLGRTRFRVGGGRNADAANTTTF 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0544 535 MobiDBLite consensus disorder prediction 191 211 - -
Lele19g0544 535 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Lele19g0544 535 SUPERFAMILY ARM repeat 217 492 IPR016024 -
Lele19g0544 535 SMART arm_5 407 451 IPR000225 GO:0005515
Lele19g0544 535 SMART arm_5 286 326 IPR000225 GO:0005515
Lele19g0544 535 SMART arm_5 327 367 IPR000225 GO:0005515
Lele19g0544 535 SMART arm_5 368 406 IPR000225 GO:0005515
Lele19g0544 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 100 IPR013083 -
Lele19g0544 535 Pfam Armadillo/beta-catenin-like repeat 327 366 IPR000225 GO:0005515
Lele19g0544 535 Pfam Armadillo/beta-catenin-like repeat 288 325 IPR000225 GO:0005515
Lele19g0544 535 Pfam U-box domain 28 95 IPR003613 GO:0004842|GO:0016567
Lele19g0544 535 Gene3D - 213 490 IPR011989 -
Lele19g0544 535 MobiDBLite consensus disorder prediction 1 25 - -
Lele19g0544 535 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Lele19g0544 535 FunFam RING-type E3 ubiquitin transferase 214 491 - -
Lele19g0544 535 CDD RING-Ubox 32 63 - -
Lele19g0544 535 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 297 334 IPR000225 GO:0005515
Lele19g0544 535 SUPERFAMILY RING/U-box 18 103 - -
Lele19g0544 535 MobiDBLite consensus disorder prediction 191 213 - -
Lele19g0544 535 PANTHER U BOX DOMAIN-CONTAINING 25 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0544 Lele-ChrLele19 3154828 3156435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0544 1 535 U-box Gene Family AT5G65200 54.464 0.0 536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1013 17 20853041 20854648 Lele19g0544 19 3154828 3156435 hybridization
Lele18g0526 18 3099914 3108619 Lele19g0544 19 3154828 3156435 hybridization