Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0542 ATGCAGCTGAGTAATTATTGTTCCTTTGAGGGAGTTTTATACTGCAAGCCTCATTATGATCAACTCCTGAAGAAGACTGGAAGCTTACAAAAAAGTTTTGAAGGTATTCCGAGAATTGCTAGAGTTGTCAGGTCTGCTGATCAGATACAGACCAATGGCAAGGTTTCTAGATTATTTGTTGGAACTCAGGACAAGTGTGTTGCTTGCAACAAGACAGTCTACCCAATTGAAAAGGCATGTGGTTCTGTGGCCGTTGACGGAAAATCTTACCACAAGAGTTGTTTCAGATGCTCCCATGGAGGATGTTTGATCAGCCCTTCTAACTATGTTGCCCATGAACACTCTCTCTACTGCAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAACTTGACCGCCATGAAAACCAAACTCTACATGAAAATACAAAACAAAATGAAAATGAAAATGTCCAAGAGGTCCCTGAGAACACAACCACCGACTAG 498 0.4217 MQLSNYCSFEGVLYCKPHYDQLLKKTGSLQKSFEGIPRIARVVRSADQIQTNGKVSRLFVGTQDKCVACNKTVYPIEKACGSVAVDGKSYHKSCFRCSHGGCLISPSNYVAHEHSLYCRHHHTQLFKQKGNFSQLDRHENQTLHENTKQNENENVQEVPENTTTD 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0542 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 134 - -
Lele19g0542 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 58 95 - -
Lele19g0542 165 PANTHER OS06G0237300 PROTEIN 2 45 IPR045268 -
Lele19g0542 165 FunFam LIM domain and actin-binding 1 60 134 - -
Lele19g0542 165 MobiDBLite consensus disorder prediction 143 165 - -
Lele19g0542 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 33 - -
Lele19g0542 165 CDD LIM2_SF3 66 130 - -
Lele19g0542 165 Gene3D Cysteine Rich Protein 60 134 - -
Lele19g0542 165 MobiDBLite consensus disorder prediction 147 165 - -
Lele19g0542 165 Pfam LIM domain 66 125 IPR001781 -
Lele19g0542 165 ProSiteProfiles LIM domain profile. 64 128 IPR001781 -
Lele19g0542 165 SMART lim_4 65 121 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0542 Lele-ChrLele19 3140233 3141699 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele19g0542 LIM 1.6e-09 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1014 17 20858381 20869105 Lele19g0542 19 3140233 3141699 hybridization