Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0528 ATGTGCTCCTGCGGCTTCAACTCAAGCATTGAACACTGGAATCTTCAACAAACAGCTTCGGTTTTTGCAGGTATGATGGGTTTTTCTTGTCGATGCTCGCTACTAGTGTTTATTGTCGCGATTAATTGGAAGCGGTATCATACCTGTACACACCCGTTGCACATATGGATTGTGGTTGACTACTCTACTGTGTTTATCTTTCGGTTGATGATGTTTGTTGATAATGGACTTTCTGCTGGAATGGGTAAGAAAAGGGGTTTAATTGAGATTTGTGGAAAATTAGATATGACCATGGGATTGTTATGCCCGGAGGTTCTATGGGAAAGATACTTCCGAAATGCGGAATTCTGGAATATAATGCTTGCAGGGTTCAGTTTTACTTGGCTTATTGCTACATTAAATCATTTAAATGCAAGAGACTTTGGGTGGCAGCAGAGATATGCTCGCTTCTGTGGACGAGTAGTGGTCCTTTCAATCCTTGCTTTGCTTCTATATCCATTTCTTTGGGCTTGGACTATCATTGGTACCCTCTGGTTCACTAGTGCCAGGAACTGCTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTCAGCTACTGTGGACTACTTTGCGTTGCTTGCATGTCATTACGCAAGTGGTTGACCCGAAGACAAGCACATTTGTTACGTGCTCAGCAGGGTATTCCTGTGTCTGAATATGGAGTTCTGGTGGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAGGAAACAAGAGGTATGGGCCAAGATGCTGGTGCATATCATCCTGGACTTTACCTAACCCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGACTGTAGTGAATGCCTCATCTGCTTAGAAGAATTTCACGAGGGGAATGAGGTTCGAGGCCTGCCTTGCGCTCATAATTTTCATGTTGAATGTATTGATGAGTGGCTTCGCCTTAATGTAAAATGTCCTCGGTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCTCTGTCCAATCTCCGTCCTGAATCAGAACGATCTTCTGCCAGCTTTGTGACAACAAGAAGATATGTGAGAGGTCAACCTTCTAGTCAGAGTTATTTGTTGAGATTACAGGGTCTTCTCCGTCCGGTGCGTTCAGAAATTGCTGGGCCGGCGGGTGGTGAGGTGGGTAATACTTTGGAAAATGCGGAAAACGGTAGTGTGCCTGAAGTGACGCGAAATGCATCAATTGGACACCAAGGCCCTTCAGTTGAATGCATGCCTGTCAGTCTCTCCGCCGCGCAAAACTAG 1353 0.4553 MCSCGFNSSIEHWNLQQTASVFAGMMGFSCRCSLLVFIVAINWKRYHTCTHPLHIWIVVDYSTVFIFRLMMFVDNGLSAGMGKKRGLIEICGKLDMTMGLLCPEVLWERYFRNAEFWNIMLAGFSFTWLIATLNHLNARDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFTSARNCLPEEGQKWGFLIWLLFSYCGLLCVACMSLRKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECLICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASFVTTRRYVRGQPSSQSYLLRLQGLLRPVRSEIAGPAGGEVGNTLENAENGSVPEVTRNASIGHQGPSVECMPVSLSAAQN 450
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0528 450 SMART ring_2 304 344 IPR001841 -
Lele19g0528 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 350 IPR013083 -
Lele19g0528 450 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Lele19g0528 450 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 21 86 IPR044793 GO:0004842|GO:0010182
Lele19g0528 450 FunFam E3 ubiquitin-protein ligase SIS3 272 350 - -
Lele19g0528 450 Pfam Ring finger domain 303 345 IPR001841 -
Lele19g0528 450 SUPERFAMILY RING/U-box 286 353 - -
Lele19g0528 450 CDD RING-H2_RNF111_like 303 347 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele19g0528 Lele-ChrLele19 3069518 3074390 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0528 140 430 C3H Transcription Factor Family AT3G47990 72.449 2.46e-149 425
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1798 21 25637754 25639802 Lele19g0528 19 3069518 3074390 CCT
Lele22g1774 22 22956517 22958565 Lele19g0528 19 3069518 3074390 CCT
Lele23g0210 23 1390084 1392132 Lele19g0528 19 3069518 3074390 CCT
Lele24g1735 24 22603580 22605628 Lele19g0528 19 3069518 3074390 CCT
Lele17g1028 17 20939484 20943540 Lele19g0528 19 3069518 3074390 hybridization
Lele18g0507 18 3011652 3017092 Lele19g0528 19 3069518 3074390 hybridization