Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0526 ATGATGAAGAACTTTCACAGCTTCAAACAGATTCCAACCCCCAATAGGTCGGCAAGGAGGCTTTCGCTTGGGGAATACAAGCGAGCTTTGTCATGGTCCAAGTACTTAGTCTCTTCGGGTGCGGCCATTAAAGGAGAAGGAGAAGAAGAATGGAGTGCCGATTTGTCTCAGTTATTCATTGGATCCAAATTTGCTTCTGGAAGACACAGTAAGCTCTACAGAGGCATTTACAAGCAAAAAGATGTCGCCATCAAGCTCATCAGCCAACCTGAGGAAGATGCCGACTTGGCTTCTGAGGTTGAAAAGCAATTCACTTCTGAAGTTGCTTTGCTCTTTCGTTTGCACCACCCAAACATCATCACTTTTTTTGCTGCTTGCAAGAAGCCACCTGTGTTCTGTATAATTACTGAATATATGGCCGGAGGATCACTGAGAAGCTATCTTCATCAGCAACAACCATATTCAGTTCCACTTAATCTGGTTCTGAAATTGGCCCTAGACATTGCAAGAGGGATGCAGTATCTTCATGCTGAGGGGGTTCTTCATAGGGATCTTAAATCAGAGAACCTATTGCTTGGGGAAGATATGTGTGTAAAAGTAGCAGATTTTGGAATCTCATGTTTAGAATCACAGATTGGTAGTGCAAAAGGATTCACAGGAACTTACCGTTGGATGGCACCTGAAATGATCAAAGAAAAACATCATACCAAGAAAGTAGATGTTTATAGCTTCGCCATAGTCCTATGGGAGCTCTTAACTGGACTGACTCCATTTCACAACATGACACCAGAACAAGCAGCTTTTGCAGTCTCACACAAGAATGCGAGGCCGCCATTGCCAACTGATTGTCCAAAGGCATTTAGTCATCTCATGAACAGATGTTGGTCAAGCAACCCAGATAAAAGGCCAGATTTTGACGAGATTGTTTCTATTTTGGAGATGTATAGTGAATACCTTGAAGAAGATCCTGAGTTCTTCTCAACTTACAATCCACCTTCTTCTAATTCTCTTGTGAGCTCATTGCCATGGCTGGTTATTAAGATTAGCTGTTTGGTATTGGTTCTCACTGTGAATTTGGTCTCTGAAGAAGTAAAGATGCCAGGAATCCTTACAAATGGGTTTGAACATAATGAAAGAGCAAATGAAATGAACGGAAATCCTTCACCTTGTAAGGAAACCGCCTCTCCAATCAAGCCCCAAAGGAGTTCCTATAGTTCACAAAGTCCTCAGAACACAGGTCCAAATGCACCTGCTCTACCTGTTGACACATCAATCAAGCAGCTTTATGAAAATGTCTGTGACATGGAAAGTTCTGATCACTCACCTTCCAGACAAAGTCTCGGATCTGATGGCAATGAGTCTGGGATCGATTCAGAATTGTGCCATCTAGTTGGAGGAACGATCAGGGAAGTGGAAATAATGGAAGAGGAAGTGGCAGAGAGGTCGAGAGGTGATTCTGTTAGTGAAACATCGTCTGGAAAAGAAACATCAGCGAATGGTGAGAAGTTAGTACAGGCGGATGAGAAGATTCAATGTGAGAAGTCCGTACCGGAGGATGAGAAGATTCAGTGTGAGATGTTGGTACAGGCTGATGAGAAGATTCAATCTGCTAGTACAAGTTCTGCTTCTTCAGAAAATTCAAACAAAGTGTCAAACTCACAGGTGGACCTTGTCCCTGAAACACCGCAAAAGTCGAAACCCAAGGGAAAAAGTCCTCCCACAAAGCCTCCTACTGATAAGAGGAATGATAAACCTCTGAGAAAACAAAATAATGGAACTACTCGTGTGAAAAAATCAAAGAATTCTCATATTAGAAGGTTAATGTCACAAAATCAGAGCGGGAGTTCCCCTGAATCTACATCAGACAAGCCAGAGATGGGGCCAGTTTTACTAAAGCAAGCAAGAGATTTGATTTTATCAGGAGATAATCCAAGGGTGGCTCTTGAATTAGCTCTTCGAGCAATGAGATTGTTTGAGAAGTGTGCTGATGGAAAACCAAGTTTGGAACTGGTTATGTGTCTCCATGTTACTGCGGCAATATATTCCAGCTTGGGCCAATACCATGAGGCAATACCACTTCTTGAGCACTCTATTGAAATTCCTCTGATTGAGGAAGGGCAAGATCATGCCCTGGCTAAGTTTGCTGGTCACATGCAATTGGGTGACACCTATGCAATGTTGGGCCAGCTTGAAAATTCAATCATGTGCTATAAGACTGGGTTGGAGGTCCAGAGGAAAGTTTTGGGAGAAACAGACCCAAGATTTGGCGAAACTTGTAGGTACGTGGCTGAAGCACATGTTCAAGCGTTGCAATTGGACGAAGCTGAGAGGCTCTGCCAAATGGCTCTTGACATTCATAGAGCAAACGGTTCACCCCCTACTCTTGAAGAGGCGGCTGATAGGAGGCTCATGGGCCTCATATGTGAAGCAAAAGGAAACCATGAAGCAGCTCTTGAGCATCTAATTTTAGCCAGCATGGCAATGGTAGCTAATGGCCAGGAAGTAGAAGTGGCATCTGTTGACAGCAGCATTGGTGACACATACTTATCTTTGTCTCGGTACGATGAAGCTATTTTTGCTTATCAGAAAGCACTCACAGTTTTTAAGACCAGCAAGGGAGAGAATCATCCAGCGGTGGGATCAATCTTCGTACGTCTGGCTGACTTGTATAACAGGACAGGGAAGATAAGGGAATCAAAATCTTACTGTGAGAGTGCACTTAGAATCTATGAGAAACCTATGCCTGGGGTCCCTCCTGAGGAGATTGCAAGTGGTCTTATGGATATTTCAGCCATCTATGAGTCAATGAATGAGCTTGATCAGGCACTCAAGTTACTTCCCAAGGCACTGGAGATATATAAGGACGCCCCTGGTCGGCAAAGCACGGTTGCAGGAATTGAAGCTCAGATGGGAGTCATGCACTACATGTTGGGAAACTATTCTGAATCTTACAACACTTTGAAGAATGCTATCTCTAAGCTTCGTGCTACTGGAGAGAAGAAATCAGCTTTCTTCGCCGTCGCTGTTAATCAAATGGGACTTGCCTGTGTGCAGCGCTATGCATTGGTTGAGGCTACAGAACTGTTTGAAGAAGCAAAGAATATATTGGAACAAGAGTATGGATCCTGTCACCATGAAACGCTTGGGGTGTATAGCAATCTTGCTGGGACCTATGATGCAATAGGCAGGGTGGATGAGGCAATTCAAATTCTGGAGTATGTAGTTGCAATGAGAGAGGAAAAACTTGGGACAGCGAATCCTGATGTGGACGATGAGAAAAGAAGGCTGAGTGAATTGTTGAAGGAAGCTGGCAGAGTAAGGAGCAGAACAGCCAGGTCACTTGAGACCCTTCTTGATGCCAATAATACTTCTTCTGAAAACAGAAATCCACAAGGGGAGGCTATCTAG 3408 0.4378 MMKNFHSFKQIPTPNRSARRLSLGEYKRALSWSKYLVSSGAAIKGEGEEEWSADLSQLFIGSKFASGRHSKLYRGIYKQKDVAIKLISQPEEDADLASEVEKQFTSEVALLFRLHHPNIITFFAACKKPPVFCIITEYMAGGSLRSYLHQQQPYSVPLNLVLKLALDIARGMQYLHAEGVLHRDLKSENLLLGEDMCVKVADFGISCLESQIGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFAIVLWELLTGLTPFHNMTPEQAAFAVSHKNARPPLPTDCPKAFSHLMNRCWSSNPDKRPDFDEIVSILEMYSEYLEEDPEFFSTYNPPSSNSLVSSLPWLVIKISCLVLVLTVNLVSEEVKMPGILTNGFEHNERANEMNGNPSPCKETASPIKPQRSSYSSQSPQNTGPNAPALPVDTSIKQLYENVCDMESSDHSPSRQSLGSDGNESGIDSELCHLVGGTIREVEIMEEEVAERSRGDSVSETSSGKETSANGEKLVQADEKIQCEKSVPEDEKIQCEMLVQADEKIQSASTSSASSENSNKVSNSQVDLVPETPQKSKPKGKSPPTKPPTDKRNDKPLRKQNNGTTRVKKSKNSHIRRLMSQNQSGSSPESTSDKPEMGPVLLKQARDLILSGDNPRVALELALRAMRLFEKCADGKPSLELVMCLHVTAAIYSSLGQYHEAIPLLEHSIEIPLIEEGQDHALAKFAGHMQLGDTYAMLGQLENSIMCYKTGLEVQRKVLGETDPRFGETCRYVAEAHVQALQLDEAERLCQMALDIHRANGSPPTLEEAADRRLMGLICEAKGNHEAALEHLILASMAMVANGQEVEVASVDSSIGDTYLSLSRYDEAIFAYQKALTVFKTSKGENHPAVGSIFVRLADLYNRTGKIRESKSYCESALRIYEKPMPGVPPEEIASGLMDISAIYESMNELDQALKLLPKALEIYKDAPGRQSTVAGIEAQMGVMHYMLGNYSESYNTLKNAISKLRATGEKKSAFFAVAVNQMGLACVQRYALVEATELFEEAKNILEQEYGSCHHETLGVYSNLAGTYDAIGRVDEAIQILEYVVAMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRTARSLETLLDANNTSSENRNPQGEAI 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0526 1135 MobiDBLite consensus disorder prediction 1107 1135 - -
Lele19g0526 1135 MobiDBLite consensus disorder prediction 378 420 - -
Lele19g0526 1135 Gene3D Phosphorylase Kinase; domain 1 48 140 - -
Lele19g0526 1135 FunFam Serine/threonine-protein kinase isoform 1 48 140 - -
Lele19g0526 1135 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 416 1122 - -
Lele19g0526 1135 MobiDBLite consensus disorder prediction 605 622 - -
Lele19g0526 1135 MobiDBLite consensus disorder prediction 573 590 - -
Lele19g0526 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Lele19g0526 1135 SUPERFAMILY TPR-like 646 790 IPR011990 GO:0005515
Lele19g0526 1135 MobiDBLite consensus disorder prediction 434 453 - -
Lele19g0526 1135 MobiDBLite consensus disorder prediction 434 458 - -
Lele19g0526 1135 Coils Coil 1089 1109 - -
Lele19g0526 1135 Pfam Tetratricopeptide repeat 837 912 - -
Lele19g0526 1135 MobiDBLite consensus disorder prediction 535 560 - -
Lele19g0526 1135 Pfam Tetratricopeptide repeat 1047 1088 - -
Lele19g0526 1135 ProSiteProfiles TPR repeat profile. 923 956 IPR019734 GO:0005515
Lele19g0526 1135 MobiDBLite consensus disorder prediction 378 418 - -
Lele19g0526 1135 SUPERFAMILY TPR-like 844 1077 IPR011990 GO:0005515
Lele19g0526 1135 Gene3D Tetratricopeptide repeat domain 629 824 IPR011990 GO:0005515
Lele19g0526 1135 SMART serkin_6 58 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0526 1135 Pfam Tetratricopeptide repeat 718 745 IPR019734 GO:0005515
Lele19g0526 1135 Pfam Tetratricopeptide repeat 680 700 IPR019734 GO:0005515
Lele19g0526 1135 MobiDBLite consensus disorder prediction 535 626 - -
Lele19g0526 1135 Pfam Protein tyrosine and serine/threonine kinase 61 312 IPR001245 GO:0004672|GO:0006468
Lele19g0526 1135 ProSiteProfiles TPR repeat profile. 838 871 IPR019734 GO:0005515
Lele19g0526 1135 PRINTS Tyrosine kinase catalytic domain signature 136 149 IPR001245 GO:0004672|GO:0006468
Lele19g0526 1135 PRINTS Tyrosine kinase catalytic domain signature 220 230 IPR001245 GO:0004672|GO:0006468
Lele19g0526 1135 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Lele19g0526 1135 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
Lele19g0526 1135 PRINTS Tyrosine kinase catalytic domain signature 174 192 IPR001245 GO:0004672|GO:0006468
Lele19g0526 1135 ProSiteProfiles Protein kinase domain profile. 58 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0526 1135 MobiDBLite consensus disorder prediction 1114 1135 - -
Lele19g0526 1135 SUPERFAMILY Protein kinase-like (PK-like) 48 314 IPR011009 -
Lele19g0526 1135 MobiDBLite consensus disorder prediction 476 506 - -
Lele19g0526 1135 SUPERFAMILY TPR-like 757 914 IPR011990 GO:0005515
Lele19g0526 1135 SMART tpr_5 1048 1081 IPR019734 GO:0005515
Lele19g0526 1135 SMART tpr_5 880 913 IPR019734 GO:0005515
Lele19g0526 1135 SMART tpr_5 838 871 IPR019734 GO:0005515
Lele19g0526 1135 SMART tpr_5 923 956 IPR019734 GO:0005515
Lele19g0526 1135 SMART tpr_5 714 747 IPR019734 GO:0005515
Lele19g0526 1135 SMART tpr_5 1006 1039 IPR019734 GO:0005515
Lele19g0526 1135 SMART tpr_5 671 704 IPR019734 GO:0005515
Lele19g0526 1135 SMART tpr_5 756 789 IPR019734 GO:0005515
Lele19g0526 1135 SMART tpr_5 964 997 IPR019734 GO:0005515
Lele19g0526 1135 SMART tpr_5 798 831 IPR019734 GO:0005515
Lele19g0526 1135 Gene3D Transferase(Phosphotransferase) domain 1 141 330 - -
Lele19g0526 1135 CDD STKc_MAP3K-like 65 312 - -
Lele19g0526 1135 Gene3D Tetratricopeptide repeat domain 825 997 IPR011990 GO:0005515
Lele19g0526 1135 Gene3D Tetratricopeptide repeat domain 998 1115 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0526 Lele-ChrLele19 3045137 3053578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0526 31 321 MAP Kinase Kinase Kinase AT1G62400 64.068 3.90e-132 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lele19g0526 PK_Tyr_Ser-Thr 7.3e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1795 21 25607738 25610587 Lele19g0526 19 3045137 3053578 CCT
Lele23g0213 23 1427161 1428873 Lele19g0526 19 3045137 3053578 CCT
Lele24g1731 24 22577726 22582017 Lele19g0526 19 3045137 3053578 CCT
Lele17g1031 17 20960988 20970011 Lele19g0526 19 3045137 3053578 hybridization
Lele18g0503 18 2985795 2989542 Lele19g0526 19 3045137 3053578 hybridization