Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0517 ATGCAGGCCGTGTTTATGATATGTGTGGTTTCAGCCATGGATCCTTATCATAGGGAATTGGTGTGTGCCATACTCAACAATCTTTCTAGAGAACTCCGGTACAAGACTAGAACGAAGTACCTGGAGGAGATTTTGGGATCTATTCTATTTTGTTGGGTTGCTTGTGGTGTAAGCCTAGTTGCACTTGTTGAGGCAAGAAATCTTTTTGTTCCAGATGCTGAACCGGATCATTTTCTTCAGTATTGTTGTCATTGGCTTCTTCCCTCCTTGCTACTTCATGAAAACAGTTCTGACCTCAATTGGATTGCCAAGGTTGCTTGTCAACCTTTGGCAGTTCTCATAAAAAATCATTTTGCATCCATATTTTCAGTTTGTATGGCTTTGCATTGCAGCAAGAAGCCTGGATCAGGAAAGGGAACGCATGTACTTCAGACCTCTATTCTGCATTATGCTCAGATATCTGAGGATGAACGGGACGAACTGATAAAGAGAAATATGGTATCTATTGTCAGCAACATTCTATCTTTGTCCTCTTGTTCACCAGACCCTGTAGTCCCTTTCTTTTCCAGAGAGATTGTATCAAATGCTATTCAAACAGTTATCGATGGTTTCATAGAGATGGTTGACAATCATACAAATGCTGGCATTGCTGACAAGATTAACATTTTCCGTCCTGATAGAGTTTTTATGTTTATTGTAGAAATTCATTATAAAATAGCAGCAGCAATTCATTATAGACATAAGTGCCATCGTCTAGCTGGAATTGAGGTGCTTATAAATATTCTTGCTCATAGAGCTGCTGTTCCAAGCACAACCTATTATGTTCTCAATTTGGTCGGGCCATTTATAAGCTGTCCATCTTTACAAGACCAATGCGTTTGTATAATTCATGTGTTATTGATACTTTTACGAAAGAATCCATCTCCTGAAATCTCCTGTGTGCTTGGAGAACAGCTGCAGTTTCTGGTTTCAAAGTTAGTGGCAAGTTGTATTCCTTATGAAACCAAAGAAGGTTCTCAAAGCACTAAATCATCACAAGTTTTATCTCTTCTCCGTATGTTAACTGTGGATTCTGATCCATCAACGTATGATTATATCAGAGAATTGGAATCCTTCCCTGAATTAGAAATCTTTGATGACATAAGGAGATTCCATGAAGAATTATGCCATGCCTATTCAATTGGAGACCTTTTATTGAAGTTTGTGAAGAGGTCTTGCTTTCTTCCACCAAGGATACTTTACTCAAGTCTTAAGGCATTGCACAGCAAGTTATTAATCGGAGAAACTTTCATGAGAGGAGGAAGTGCTGAAGATTTTTCGAAAGACAGATATTGGCATGGTGATCGTGAAATTGGCCATGCAATCTGGAGACTTGTTTGCATGTGTAGTTCAAATGATGCAATTTGTGTTAGAGAATTGGTGTCAGATTTCATATCTAGGGTTGGTGCAGGGGATCCATACTCTGTTGTTTTCCATTTTCCTGGTGTGACCAGCCATATCCATGCTGGTAAATTAATGGATGTCAGTGATAAAATGGAAACTGGTTCCAACATAGAGACATGCTTATCTGAAGAACTCCTGATTGTCCTTATGAAATTTCTAAAGAAGTATCTGATGGATGATTCTGTGAAGATTATTGATATGGCATCACAAACTCTTCGGGGAATCCTCTCAACTGAAAGAGGCCAAAGTGCTTTACGGTCTTTTGATTCCTATGAGAAGTCTCTGATTGAGGTGCATTCCAAGGGTGTCAATATTGAACTTGTGAATAATTTCCTTTTGGACCTGGAAAAGAAATCAGAAGTTGAGGCAATTTCACTGGAGAAGTCTTCTGTATGGTTGACACATGGTAAATCATTTGAGATGTGGATTTGCCCATTGGCATATTCGCTGATTGTCTACTGCAATGATGTGATACTGAGGTTGTGTCAAGATATTGTATTTCTTAAAGCTGAAGTCGCTGAGATTCTTTTGCCAAGTATTTTTGTCAATATTGCTGGAAGGAAGGGTGTGGATATTGATCTTCATAGATTAATCTCTTTACAGTTGCAAGAGCATGTTTTTGCAGAGTCCAATAAGTTGACCAAATCGATTCAAGTGTTATTAAATTGCCTTAATGAACTTCGTATATGTCATGTTGCGGAAAGTTACAGCAACAAATCACGATCAACACCTGGGAAGGCAAGAGACTCTTCCACTCTATCAAATGTATTGTCTAAGTCAGCATCCTCATGGGATAAGGTGTATTGGTTTTCCATTGATTATCTTTTAGTTGCAAAGTCAGCAGTTAGTTGTGGATCATATTTTACCTCTGTGATGTATGTGGAACATTGGTGTGAAGAGCAGTTCAAGGGTATGTCTTTGGGGGGGCCGGATTTCTCCCACGAGAAAATGTTGCCAGATCATATTGAAATACTTGTCTCAGCAGTCACTAGAATCAACGAACCTGATAGCTTATATGGAATTCTTCAGTCTCACAAGTTGAGTTCTCAAATCATTACCTTTGAGCATGAGGGAAACTGGGGAAAGGCCCTTGAATACTATGACTTGCTTGTAAGATCAGATGATTCAAAACTGGCGGATAGCAGTTTTTTTAGTTCGCCATCAGATCACGCCCAAGCAGTGGATTCTTCATCCATTTCCACAAAGGTTGATCAGATAAGGCAATTCAAACCTTACAAAGGGTTGATTAGATCATTACAGCAGATTGGATGTACACATGTCTTGGACTTCTATTGCCAAGGGTTAACATCAAGGAATGACCAGCTTCCGCATGATTTAGAGTTTGCTGAATTGCAGTACGAGGCTGCTTGGCGTGCTGGGAATTGGGATTTCTCCTTACCATATACAGGAGCTAATTCTGCTCCTTTAACTCCGGATATCAAATTTGATCATTTTAACGAAAATCTGCACAGGGCACTCCAGGAGGGGGACTTGAGTGGCTTCTGTATAAAGTTGAAAGATTCAAAGCAGATGCTTTATCATCTTGGCATGGCATGGGATTTACGTTGGAGATCATCTCAACATAAAAGTTCAAAACTCGGTCTCGAGAAGCAAAATGTGTCTCCTGAGCCAGTAATTCCTACCAGTGAACAGTTGTCATGGCTGAATTCGGGTTGGTGCTCAATTTTGGAACGGATGCAGCTGCATATGAATCTGTTAGAACCTTTTATAGCATTTCGACGGGTTCTACTTCAGATATTAAGTTGTAGAGATTATGTTTTGCAACATCTTCTGCAATCTGCCTCCACTCTTCGAAAGGGATCTAGGTTTTCTCAAGCAGCGGCTGCTTTGCATGAGTTTAAGTTCCTTTGTGTTGAAGCCAAAGGGGAATCTTCATCCATGTATTGGCTAGGAAGGCTTGAAGAAGCAAAGCTTTTGCGAGCTCAAGGTCAACATGAGATGGCTATCAACCTCGCAATGTATATTTCAGGGAACTATGGTTCTAATAATGAGGCTTCAGATGTATATCGGTTGATTGGGAAGTGGCTGGCAGAAACCAGATCTAGCAACTCTAGAACAATTTTAGAGAAGTATTTGAAACCTGCAGTCTCAATCACTGAGGATGTGAACACTACTGATAAGAAGTCCATGGAACGAAAATGTCAGACTCATTTTCATCTTGCACATTATGTTGATGCGCTATTTAGGAGCCATGAAGAAAGACTCAACTCTAGTGAGTGGCAAGCAGCAATGCGGTTACGGAAACATAAGAAAGTGGAGTTGGAAGCACTTGGTAAAAGATTAAAGAGCTCAAGAAAGGGGGAGAAGACTGACTATTCCTTGAAAATACTAGAGCTGGAAAAGCAAGTAGATATGGACGAGGAAGAGGCTCAGAAACTGCAGGATGACCGAGACAATTTTCTTAGCCTGGCTTTGGAGGGATATAAACATTGTTTAGTCACTGGAGACAAGTATGATGTGAGAGTGGTGTTTCGTCTAGTTTCCTTGTGGTTCAGTCTCTCTTCTCGAAAAAATGTAGTGAATACTATGCTTAGCACAATCAATGAGGTTCAATCTTTTAAATTTTTACCTTTAGTGTATCAAATTGCTTCTAGAATGGGTGGCTCAAAGGATGATAAGGGAACTTATAATTTCCAGTCTGCTTTGGTGTCTCTTGTGAAGAAAATGGCCATTGATCATCCATACCATACAATACTTCATCTTTTGGGTCTGGCGAATGGAGACCGCATCAAGGACAATCAGCGTAGCAGAAGTTCGTTTGTGGTTGATATGGACAAAAAGCTTGCAGCAGAAAACCTTCTACATGAGCTATCGTCATATCATGGAGCTATGATCCAGCAAACAAGGCAAATGGTGGAGATTTATATCAAACTTGCTGAGATGGAAACAAGGAAAGAGGATACCAATAAAAGGGTGACTCTACCAAGAGAATTACGTAGTGTTCCAGCGCTTGAACTTGTACCTGTAGTCACAGCTACTGTTCCAATCGACTATAGTTGTCAGTATCATGATGGAACTTTTCCTTATTTCAAAGGACTTGCAGATTCAGCAAAGGTAATGAATGGTGTAAATGCTCCAAAAGTGATCGAATGCCTTGGATCTGATGGTTGCAGGTATCGCCAACTTGCAAAATCTGGAAATGATGACCTAAGACAAGATGCTGTGATGGAACAATTCTTTGGTTTAGTTAACACATTCCTGAGGAACCACCGAGATACATGGAAAAGAAGGTTAAGTATACGGACCTACAAGGTTGTTCCTTTTACACCAAGCGCTGGTGTTCTTGAGTGGGTTAATGGCACTCTTCCTCTTGGTGAATATCTTATGGGGAGCATGAGAAATGGCGGTGCTCATGGTCGATATGGAATAGGGGATTGGTCATGTCTTAAATGTAGAGGGCACATGATCAATGAGAGGGACAAGCGCAAAGCGTTCCAAGAAGTTTGCCAGAATTTCAGGCCAGTTATGCATCACTTTTTCTTGGAGAGATTTTTCAAGGCATCTGAGTGGTTTGAGAAGAGACTAGCTTACACGAGAAGCGTAGCTGCTAGTTCTATGGTTGGTTACATAGTTGGTCTCGGTGATCGACATTCAATGAATATTTTAATTGATCAAGCCTCTGCTGAGGTTGTTCACATAGATCTTGGTGTTGCCTTTGAACAAGGTCTGATGCTCAAGACTCCAGAACGGGTTCCATTTAGGCTGACAAGAGACATAATTGATGGAATGGGCATAACTGGAGTAGAGGGGGTTTTCAGAAGATGTTGTGAGGAAACTCTTTCTGTTATGCGAACTAACAAAGAAGCATTGTTGACAATTGTTGAAGTTTTTATCCATGATCCTCTTTATAAGTGGGCTTTATCTCCTCTAAAAGCTTTGCAACGTCAGAAGGAAACAGATGATGATTTGGATTCAACTTTCTTGGAACCTCAAGGTGATCTTGAAGGAAATAAGGATGCTACCCGTGCACTATTGCGTGTCAAGCAGAAGTTAGATGGATATGAAGAAGGTGAAATGCGGAGTGTACATGGGCAGGTTCAACAACTCATTCAAGATGCAATTGATCCTGAGCGATTGTGCCAAATGTATCCTGGTTGGGGATCTTGGTTATAG 5577 0.4043 MQAVFMICVVSAMDPYHRELVCAILNNLSRELRYKTRTKYLEEILGSILFCWVACGVSLVALVEARNLFVPDAEPDHFLQYCCHWLLPSLLLHENSSDLNWIAKVACQPLAVLIKNHFASIFSVCMALHCSKKPGSGKGTHVLQTSILHYAQISEDERDELIKRNMVSIVSNILSLSSCSPDPVVPFFSREIVSNAIQTVIDGFIEMVDNHTNAGIADKINIFRPDRVFMFIVEIHYKIAAAIHYRHKCHRLAGIEVLINILAHRAAVPSTTYYVLNLVGPFISCPSLQDQCVCIIHVLLILLRKNPSPEISCVLGEQLQFLVSKLVASCIPYETKEGSQSTKSSQVLSLLRMLTVDSDPSTYDYIRELESFPELEIFDDIRRFHEELCHAYSIGDLLLKFVKRSCFLPPRILYSSLKALHSKLLIGETFMRGGSAEDFSKDRYWHGDREIGHAIWRLVCMCSSNDAICVRELVSDFISRVGAGDPYSVVFHFPGVTSHIHAGKLMDVSDKMETGSNIETCLSEELLIVLMKFLKKYLMDDSVKIIDMASQTLRGILSTERGQSALRSFDSYEKSLIEVHSKGVNIELVNNFLLDLEKKSEVEAISLEKSSVWLTHGKSFEMWICPLAYSLIVYCNDVILRLCQDIVFLKAEVAEILLPSIFVNIAGRKGVDIDLHRLISLQLQEHVFAESNKLTKSIQVLLNCLNELRICHVAESYSNKSRSTPGKARDSSTLSNVLSKSASSWDKVYWFSIDYLLVAKSAVSCGSYFTSVMYVEHWCEEQFKGMSLGGPDFSHEKMLPDHIEILVSAVTRINEPDSLYGILQSHKLSSQIITFEHEGNWGKALEYYDLLVRSDDSKLADSSFFSSPSDHAQAVDSSSISTKVDQIRQFKPYKGLIRSLQQIGCTHVLDFYCQGLTSRNDQLPHDLEFAELQYEAAWRAGNWDFSLPYTGANSAPLTPDIKFDHFNENLHRALQEGDLSGFCIKLKDSKQMLYHLGMAWDLRWRSSQHKSSKLGLEKQNVSPEPVIPTSEQLSWLNSGWCSILERMQLHMNLLEPFIAFRRVLLQILSCRDYVLQHLLQSASTLRKGSRFSQAAAALHEFKFLCVEAKGESSSMYWLGRLEEAKLLRAQGQHEMAINLAMYISGNYGSNNEASDVYRLIGKWLAETRSSNSRTILEKYLKPAVSITEDVNTTDKKSMERKCQTHFHLAHYVDALFRSHEERLNSSEWQAAMRLRKHKKVELEALGKRLKSSRKGEKTDYSLKILELEKQVDMDEEEAQKLQDDRDNFLSLALEGYKHCLVTGDKYDVRVVFRLVSLWFSLSSRKNVVNTMLSTINEVQSFKFLPLVYQIASRMGGSKDDKGTYNFQSALVSLVKKMAIDHPYHTILHLLGLANGDRIKDNQRSRSSFVVDMDKKLAAENLLHELSSYHGAMIQQTRQMVEIYIKLAEMETRKEDTNKRVTLPRELRSVPALELVPVVTATVPIDYSCQYHDGTFPYFKGLADSAKVMNGVNAPKVIECLGSDGCRYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLSIRTYKVVPFTPSAGVLEWVNGTLPLGEYLMGSMRNGGAHGRYGIGDWSCLKCRGHMINERDKRKAFQEVCQNFRPVMHHFFLERFFKASEWFEKRLAYTRSVAASSMVGYIVGLGDRHSMNILIDQASAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGITGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDLDSTFLEPQGDLEGNKDATRALLRVKQKLDGYEEGEMRSVHGQVQQLIQDAIDPERLCQMYPGWGSWL 1858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0517 1858 FunFam Serine/threonine-protein kinase ATM 1632 1822 - -
Lele19g0517 1858 SMART FATC_2 1826 1858 IPR003152 GO:0005515
Lele19g0517 1858 SMART pi3k_hr1_6 1528 1822 IPR000403 -
Lele19g0517 1858 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 1668 1688 IPR018936 GO:0016301
Lele19g0517 1858 ProSiteProfiles FAT domain profile. 757 1395 IPR014009 -
Lele19g0517 1858 Coils Coil 1264 1284 - -
Lele19g0517 1858 SUPERFAMILY Protein kinase-like (PK-like) 1438 1785 IPR011009 -
Lele19g0517 1858 FunFam Serine/threonine-protein kinase ATM 1427 1586 - -
Lele19g0517 1858 Pfam Phosphatidylinositol 3- and 4-kinase 1534 1774 IPR000403 -
Lele19g0517 1858 Pfam FATC domain 1829 1858 IPR003152 GO:0005515
Lele19g0517 1858 ProSiteProfiles FATC domain profile. 1826 1858 IPR003152 GO:0005515
Lele19g0517 1858 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 1531 1546 IPR018936 GO:0016301
Lele19g0517 1858 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 1501 1811 IPR000403 -
Lele19g0517 1858 Gene3D - 1427 1586 - -
Lele19g0517 1858 Gene3D - 1632 1819 IPR036940 GO:0016301
Lele19g0517 1858 CDD PIKKc_ATM 1498 1775 IPR044107 GO:0004674|GO:0006281|GO:0006974
Lele19g0517 1858 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 2 1858 IPR038980 GO:0004674|GO:0006974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0517 Lele-ChrLele19 2981591 3006195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0517 1644 1784 Lipid Metabolism Gene Families AT5G09350 25.166 2.18e-07 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0517 19 2981591 3006195 Lele21g1796 21 25621275 25622156 CCT
Lele19g0517 19 2981591 3006195 Lele22g1772 22 22941374 22942132 CCT
Lele19g0517 19 2981591 3006195 Lele23g0212 23 1411059 1412346 CCT
Lele19g0517 19 2981591 3006195 Lele24g1732 24 22590536 22591291 CCT