Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0509 ATGGATCTTCACACAAATCTCAGAGATAACTCTTACATCACCTCATCACATCCAATAATGCATCTTCAAGAAACTTACCAGCTGAGGCCTAATATGATGAAATTAGATGAATCTCCTTTTGGGGTTCCTAATTCATCATCACAGGGTTTATTGCAAGATTTTAATTACCACTTTGATCATCATCATCATAATCAGTTTCATCAACTTAATGGGTCTTCTTCATTATCCAACTCATCATCATCAGCTTTTGGGATCCATGCTTTGATGAGTTTTGATTCTTTTGATGATTTTGATGTTGAGTGCAAGCCTTTTGTTGAGATCAATAATGCTCACCAGGTTTTGGATAATTTCCAACATGGATCAGCTAATTGTAGCTTGAACGTCGTACCTCAGAGAAATCAAGTCCACAACATGAACCAAACCTATGTGATGCCTTTCAATAATTCTGAGGAAATTATAAAGCCTGTGAATTTTGTTGTGCCTGATGAACTCTCGTGCATATCCCCTTCTGTGAATTATCACAGAAAAGTTGGCTTCAATAAGAAAAGTAATAGGGTTTTTTCATCATCATCATCATCTCTAACCACTAGAAGGAAGAGTTACAGACTTCGAAAGAAATCCAACGCTGTAAAGGGACAATGGACCATAGAAGAAGATAGGTTGTTGATTCAGTTGGTGGAACAATATGGAGTGAGAAAGTGGTCTCATATTGCTCAGATGTTGCCAGGAAGAATAGGCAAACAGTGCAGAGAGAGATGGCATAATCATCTAAGACCTGACATTAAGAAGGAGACATGGACGGAAGAAGAAGACAAGATACTGATAGAAGCTCATGGAGAGATAGGGAACAAATGGGCAGAGATAGCAAAGAGATTGCTTGGAAGAACAGAAAACTCCATAAAGAACCATTGGAATGCCACAAAGAGAAGACAGTATTCAAAGAGAAAATGTCGCTCAAAGCACCCAAGACCCTCTCTTCTTCAAGAATACATCAAAAGCTTGAACTTAGACCAAAACCCTCCATTAGACTATCGCAAAAGATCATCATCATCTGCTGCTAATAACACTGACGCAACCATAAGAGAATCTGAATTGGTTCCGAATTATGGGTTTAAGGAGGCTGAAGAGTTTTGCTTTGACGAGAGCTTGCTTCGAGAAGGTGGCTGCAGAACTCTTGATTCTGTGCTAAATGATGAAGATGATGACAAGTTTGAAGAGAAGAAGGAGCTGGATTTGGTGGAGATGATGTCTCAGGTCAATCAAGCTATTATTGATATGTAA 1281 0.388 MDLHTNLRDNSYITSSHPIMHLQETYQLRPNMMKLDESPFGVPNSSSQGLLQDFNYHFDHHHHNQFHQLNGSSSLSNSSSSAFGIHALMSFDSFDDFDVECKPFVEINNAHQVLDNFQHGSANCSLNVVPQRNQVHNMNQTYVMPFNNSEEIIKPVNFVVPDELSCISPSVNYHRKVGFNKKSNRVFSSSSSSLTTRRKSYRLRKKSNAVKGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKETWTEEEDKILIEAHGEIGNKWAEIAKRLLGRTENSIKNHWNATKRRQYSKRKCRSKHPRPSLLQEYIKSLNLDQNPPLDYRKRSSSSAANNTDATIRESELVPNYGFKEAEEFCFDESLLREGGCRTLDSVLNDEDDDKFEEKKELDLVEMMSQVNQAIIDM 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0509 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 261 IPR017930 -
Lele19g0509 426 ProSiteProfiles Myb-like domain profile. 258 308 IPR001005 -
Lele19g0509 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 312 IPR017930 -
Lele19g0509 426 Gene3D - 210 262 - -
Lele19g0509 426 MobiDBLite consensus disorder prediction 338 359 - -
Lele19g0509 426 Pfam Myb-like DNA-binding domain 263 305 IPR001005 -
Lele19g0509 426 Pfam Myb-like DNA-binding domain 211 257 IPR001005 -
Lele19g0509 426 CDD SANT 265 308 IPR001005 -
Lele19g0509 426 CDD SANT 214 257 IPR001005 -
Lele19g0509 426 Gene3D - 264 329 - -
Lele19g0509 426 SMART sant 210 259 IPR001005 -
Lele19g0509 426 SMART sant 262 310 IPR001005 -
Lele19g0509 426 ProSiteProfiles Myb-like domain profile. 206 257 IPR001005 -
Lele19g0509 426 FunFam Transcription factor MYB119 264 328 - -
Lele19g0509 426 MobiDBLite consensus disorder prediction 342 359 - -
Lele19g0509 426 FunFam Transcriptional activator Myb isoform A 210 263 - -
Lele19g0509 426 SUPERFAMILY Homeodomain-like 209 304 IPR009057 -
Lele19g0509 426 PANTHER MYB PROTEIN-RELATED 211 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0509 Lele-ChrLele19 2914467 2916124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0509 130 398 MYB Transcription Factor Family AT4G18770 55.634 3.08e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele19g0509 Myb_DNA-binding 1.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1048 17 21082237 21083872 Lele19g0509 19 2914467 2916124 hybridization
Lele18g0489 18 2886419 2892563 Lele19g0509 19 2914467 2916124 hybridization