Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0485 ATGGGTCGCCATTCCTGTTGTGTGAAGCAAAAGTTGAGGAAAGGCCTGTGGTCTCCTGAAGAAGACGAGAAGCTCTTCAACCACATCACTAGATTCGGCGTTGGCTGCTGGAGCTCCGTTCCTAAACTTGCCGGGCTTCAAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATCTGAGGCCTGATTTGAAAAGAGGCGTGTTCTCGCAACAAGAGGAGGATATTATTCTGAGTCTCCATCAAGTTCTGGGCAACAGGTGGGCTCAGATTGCAGCGCAGTTACCAGGAAGAACAGATAACGAAATCAAGAACTTCTGGAATTCGAGCTTGAAGAAGAAGCTGTTGAAGCAAGGGATTGACCCAGCCACACTCAAGCCCTTCACTCATCAACCTCAAATAAAGCAGGAGATCAACAATAGCTTAGAGACACCATCATCAGCACCATTATCTCTGCAAAATATGCATCATTTCTTAAACTTAACCTCCTCACATCAGTCACAGGGAGCATCACCTTTTCTGATAGGAGACGATTCAAGTTATTACGACGCAGCTGCTTTAACAGAAGCCTCCAGAGATGAAATCCTCATGAGCATGAGCAATATTAAGCCTGAATGGGTCGACCCTTTGTCGTACTACGAATCATACACTAGTCATAATCAGTATGGAAGCAGTTCTTCAAGCTACGGGATCTGTTCATCAATGCCAAGTTTGACGAGTTCGGATCAGAACAACTTGTCGGCGAGGACGATGGAGTTCTCATCGGACAACAACAATAATAACTCGGGTTCGAAAATCAGTTCAAGCAATAACAGCTCAAATATGAGCGGTTATGTGATGGAGAATAACAATAATAATAATAATGGAGGGATGTCATCGTGGAAGGGAGAGAACAACAGGATGGAGGCTTCGTTGTTTCAATTTCAATCGAACGGTATAATAAAATCGGAGGAACATCTGATGAACACAACAGCATGCTCGTGGCAAGATGCGGTGCAGCTTCAGAATCACAGTTCTATAGATTTCAACAGCTATCCGTTAACGTCATTCTCACAAGATCTAACGGCAGCGACTTCTTATGATGTATTCCGGCATATATGA 1104 0.4393 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGVFSQQEEDIILSLHQVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLLKQGIDPATLKPFTHQPQIKQEINNSLETPSSAPLSLQNMHHFLNLTSSHQSQGASPFLIGDDSSYYDAAALTEASRDEILMSMSNIKPEWVDPLSYYESYTSHNQYGSSSSSYGICSSMPSLTSSDQNNLSARTMEFSSDNNNNNSGSKISSSNNSSNMSGYVMENNNNNNNGGMSSWKGENNRMEASLFQFQSNGIIKSEEHLMNTTACSWQDAVQLQNHSSIDFNSYPLTSFSQDLTAATSYDVFRHI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0485 367 MobiDBLite consensus disorder prediction 252 297 - -
Lele19g0485 367 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele19g0485 367 Gene3D - 69 143 - -
Lele19g0485 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele19g0485 367 PANTHER MYB DOMAIN PROTEIN 55 1 300 - -
Lele19g0485 367 CDD SANT 70 112 IPR001005 -
Lele19g0485 367 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lele19g0485 367 CDD SANT 17 61 IPR001005 -
Lele19g0485 367 SMART sant 66 114 IPR001005 -
Lele19g0485 367 SMART sant 13 63 IPR001005 -
Lele19g0485 367 FunFam MYB transcription factor 11 67 - -
Lele19g0485 367 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lele19g0485 367 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele19g0485 367 FunFam Myb transcription factor 69 116 - -
Lele19g0485 367 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele19g0485 367 Gene3D - 11 67 - -
Lele19g0485 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0485 Lele-ChrLele19 2739444 2740745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0485 1 130 MYB Transcription Factor Family AT4G01680 80.769 6.92e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele19g0485 Myb_DNA-binding 7.7e-13 CL0123