Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0477 ATGGTATCCGACTTAGCTTTCATATATATGTCCCCAATTGTTTCCCCCTCTTCCCGTACCACGGGCAAAACAGTGTGTTCTTCCATGGAAGTTACCCTGCAAAATCTCCTAGTCGACGAAATATCCGAACAAAATGCTGTCCCCGCCCAAGACCCAGCTCCTTCTCCCATGCTTTCTGAAGAGAAGGTTATCGTCTCTGTCGAAGTATGTTTGAAACCTTCAAGTACAGCTCGGATTGAGGATGTCCGTTCAGCCGTCGAGAGGATGCTCGAGAACAGGTGTTTGAGCTATATTGATGGACCCATTCCTCTGCCTCTTGATGACACGTTTCTTTCAGAAAACGTGCAAAGAATCTGTATTTGTGATACTGACGAGTCGACGAGCAATCATAGAATTCTTTTGTTCTGGCAAGTCAAGCCTGATGTGCACGTCTTTCAGCTTAGTGAAGAAGGACCATGCGAGGAAATAAGTACTGATGGCCAACCTTCCAGCTTCAATGAATGGATTCTTCCAGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTCAAGCAAAGATTGTTAAGATATGCAGCGAGCGCTTTGCTTTTTACTGAAAAGGGCGTTGATCCATTTCTGGTTTCATGGAACCGCATTGTTCTCTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTGGCACAAAAACTATCCATTCGATTCAATCAAAGATACCCCCAATGTCAGCTGATTGAAGTTAATGCACACTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCGAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCCAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGACTCTATTCGGGTTGTCAATGCGTTGTTAACTCAGATGGACAAGTTAAAATCTTCTCCAAATGTGATAATTCTAACTACATCCAACATAACTGCTGCTATTGATATTGCTTTTGTTGATCGAGCTGATATAAAAGCATATGTTGGTCCTCCAACTCTCCAAGCTCGCTATGAAATACTAAGGTCGTGCTTGGAGGAATTGATGCGCACTGGGATCTTGACAAGTTTACAGGATTGTATGAACATCAAGCTTCCAAATTATGCTAATGCTAAGGAAAAGTGTAACGCACCTGAGAATCATGAAGCCGCTCAACTATGTAAACAATTACTTGAAACTGCGGAGGCATGTGAGGGAATGAGCGGAAGGTCTTTGAGAAAGCTTCCATTCTTGGCACATGCTGCTCACGCCAATCCTTCAGAATGCAACCCATTTAAGTTTTTATGTACAATGATAGAAACAGCGAAGAGGGAGCGCTCTGAGCTTCCCGACTGA 1434 0.4275 MVSDLAFIYMSPIVSPSSRTTGKTVCSSMEVTLQNLLVDEISEQNAVPAQDPAPSPMLSEEKVIVSVEVCLKPSSTARIEDVRSAVERMLENRCLSYIDGPIPLPLDDTFLSENVQRICICDTDESTSNHRILLFWQVKPDVHVFQLSEEGPCEEISTDGQPSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLEELMRTGILTSLQDCMNIKLPNYANAKEKCNAPENHEAAQLCKQLLETAEACEGMSGRSLRKLPFLAHAAHANPSECNPFKFLCTMIETAKRERSELPD 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0477 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 446 IPR027417 -
Lele19g0477 477 SMART AAA_5 214 366 IPR003593 -
Lele19g0477 477 Gene3D - 161 381 IPR027417 -
Lele19g0477 477 FunFam pachytene checkpoint protein 2 homolog 158 380 - -
Lele19g0477 477 ProSitePatterns AAA-protein family signature. 336 355 IPR003960 GO:0005524|GO:0016887
Lele19g0477 477 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 50 474 IPR044539 -
Lele19g0477 477 Pfam ATPase family associated with various cellular activities (AAA) 218 363 IPR003959 GO:0005524|GO:0016887
Lele19g0477 477 CDD AAA 216 364 - -
Lele19g0477 477 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 332 346 IPR001270 GO:0005524
Lele19g0477 477 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 218 236 IPR001270 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0477 Lele-ChrLele19 2697387 2703454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0477 218 391 Calmodulin-binding Proteins AT3G56690 29.545 3.26e-13 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1084 17 21291879 21296665 Lele19g0477 19 2697387 2703454 hybridization
Lele18g0455 18 2657174 2661862 Lele19g0477 19 2697387 2703454 hybridization