Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0472 ATGATCACAATCACTTTCACTCTTCTTTCGTCATCACGGTTCACACGTTCCTGCTTTCTCAATCGCTTTTGGTGTATCCCTACACTATCCCCATATCCATCTGCTTCTCCCACTTTCTCATCGATTTCCATTTCAACTTCTTTGAATTCGTTCCCCATTCTCAGTTGCAGCGGCTTTCAGGATTTCGTTCTGGCAATGCTGCAGGATTCGTCCCAACAAGACTTTGATGACTATGACTCTGGTTCTGAACTTGTAGAGATTGATCCCGCCGGTCGATATGGGTTGTTTCTTTTGCTTGGGAGATGGCTTGTTTCTTTTAATGACGAAACATATCGTGCTTTCGATGAGTTGGAAGGAATTGAAGTTGCATGGAATCAGATTAAAGTGGGTGAACGAATGCGTAACTCTGAAGATTTGGAACGCCTGTATTCAGAAGTTCATCTGCTCAAGACTTTAAAGCACAAAAATATCATCACATTTTATAATTCATGGTTTGAACCAGAGCATGGCAACATCAACTTCATTACTGAAATATTTACCTCAGGAACATTACGCCAGAAGAAACACAAGCGCGTTGACTTGAAAGCCTTAAAGAAATGGTCCAGGCAGATTTTGGAGGGGCTTTTCTATCTTCACAGTCATGATCCACCAATTATTCATCGAGATCTTAAGGGTGACAACATCTTTGTCAATGGAAATCAAGGTGAGGTGAAAATTGGTGACTTGGGACTAGCAGCCATTCTTGAGCAAGCCAATTCAGCTCATAGTGTCATAGGTACTCCAGAGTTTATGGCGCCAGAGCTGTATGAAGAGGAATGCAATGAGCTTGTCGACATTTATGCTTTTGGCATGTGCTTGCTAGAATTGGTCACCTTTGAGTACCCTTACGTTGAATGTGCAAATGCCGCTCAAATATACAAGAAGGTGACATCTGGAGTAAAGCCAGCATCTTTGGCAAAAGTGACAGATCCTGGGATGAAAGCATTTATAGGAAAGTGTGTTGCAAATGTATCTGAACGGTTAGTTGCTAAGGATCTCTTAATGGATTCGTTTCTTCATTTAGACGAAGATAATGAGAATATAGGTCATATTAGCAATATCCACTTTCCTTTTAATATTGAGGCAGACACTGCAGTTGGGGTTGCTAGTGAAATGGTTGAGGAGCTTGAGCTCTCTGACCAAGATGTCACAACTACTGCTGAGGTGATTGAATCAGAAATTCAAGACCGCTTTCCAGTTTCAAGAAGATGTGTCTCTACCACTTTTATTGGTAGTGTCGCATCAGAAAGATTACCTTCAGTGAATGTGGGCACTGAGGAAAGTAACTTGACTGGAAATGATGCTGCCCCAGTTCATCAGCAGGCTAAGAACTGTGTTGATGATGATGCCTGGAGTCTCATCCTCATCAAGAAAGCTCAGAACTTAGCGTGTCATTTGGATTCTTGGAGGCGTTGTGAGGTTCAATTTTGTTCTGCCACAGATAACAAAATCCTGAAATCATCATCCTCTTCTTCCCCTATCTTCTTCACTCCCTCTCCTCTATCCCCCCACACCACTCTCTCTTCTCTCCCTGTCAAGGATTCTCCGATGGCGATTTCTTCAGCCACAGCTTCTGCTTCCTCCAAGCTCATATTCCTTCATTCCACTCCTTCTTCCTCCTCCTCTTCTTCCTCACTCTCTCTAAGCCCCCACAAACTCACATCCCCCACATCCCATCTCTCCTCTTCCTTCATTAACCCCTCCACAGTCCTCCACCTTTCTCCCTCCTCCACCTCCTCCGCCACCACTCGCAACCGCTCCTTCACAATCCGAGCTGCTCGTGGCAAGTTCGAGAGGAAGAAACCCCATGTCAATATCGGCACCATTGGGCACGTCGACCACGGCAAGACCACTCTCACTGCTGCTCTCACCATGGCCTTAGCGGCTCTGGGAAACAGCGCCCCTAAGAAATATGATGAAATTGACGCTGCCCCTGAAGAGCGAGCTCGTGGAATCACCATTAATACTGCCACTGTCGAGTATGAGACTGAGAATCGCCATTACGCCCACGTCGACTGTCCCGGCCACGCCGATTACGTCAAGAACATGATTACCGGTGCTGCTCAGATGGACGGCGCTATTCTTGTCGTTTCCGGCGCCGACGGTCCAATGCCGCAGACTAAGGAGCACATACTTTTGGCCAAGCAAGTCGGTGTCCCAAACATGGTCGTGTTTCTAAACAAGCAAGACCAGGTTGATGACGAGGAGCTTCTGCAGCTCGTGGAATTGGAGGTTCGTGAGCTTCTTTCGTCTTATGAATTCCCTGGTGATGAAGTCCCCATTATTTCTGGTTCTGCTCTGCTAGCTTTGGAGGCATTGATGGCGAATCCCGCCATTAAACGAGGAGAAAACCAATGGGTCGACAAAATTTACGAACTCATGGATTCTGTGGATAGCTACATCCCAATTCCTCAACGTCAAACTGATCTTCCTTTCTTGCTGGCCATTGAAGACGTGTTCTCAATCACCGGTCGTGGAACTGTGGCCACAGGCCGTGTCGAGAGAGGCACAATTAAGGTTGGAGACACTGTAGATATTGTTGGGGTAAGGGAAACAAGAAACACAACCGTGACTGGTGTAGAAATGTTCCAGAAAATTCTTGATGATGCCATGGCTGGGGATAACGTGGGGTTGTTGTTGAGAGGTATCCAGAAGGTTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCAGGCACCATTACTCCACACACCAAGTTCGAAGCAATTGTTTATGTCCTGAAGAAGGAGGAAGGAGGAAGGCACTCACCATTCTTTGCAGGTTACAGGCCACAGTTCTACATGAGGACCACTGATGTTACTGGAAAAGTGACAGCCATAATGAATGATAAGGATGAAGAATCAAAGATGGTTATGCCTGGAGATCGTGTGAAGATGGTTGTTGAACTTATAGTGCCAGTAGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTCATTCAATCCATCATTGAGTGA 3042 0.4579 MITITFTLLSSSRFTRSCFLNRFWCIPTLSPYPSASPTFSSISISTSLNSFPILSCSGFQDFVLAMLQDSSQQDFDDYDSGSELVEIDPAGRYGLFLLLGRWLVSFNDETYRAFDELEGIEVAWNQIKVGERMRNSEDLERLYSEVHLLKTLKHKNIITFYNSWFEPEHGNINFITEIFTSGTLRQKKHKRVDLKALKKWSRQILEGLFYLHSHDPPIIHRDLKGDNIFVNGNQGEVKIGDLGLAAILEQANSAHSVIGTPEFMAPELYEEECNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVTSGVKPASLAKVTDPGMKAFIGKCVANVSERLVAKDLLMDSFLHLDEDNENIGHISNIHFPFNIEADTAVGVASEMVEELELSDQDVTTTAEVIESEIQDRFPVSRRCVSTTFIGSVASERLPSVNVGTEESNLTGNDAAPVHQQAKNCVDDDAWSLILIKKAQNLACHLDSWRRCEVQFCSATDNKILKSSSSSSPIFFTPSPLSPHTTLSSLPVKDSPMAISSATASASSKLIFLHSTPSSSSSSSSLSLSPHKLTSPTSHLSSSFINPSTVLHLSPSSTSSATTRNRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDEVPIISGSALLALEALMANPAIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDIVGVRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0472 1013 Gene3D Translation factors 952 1012 - -
Lele19g0472 1013 Pfam Elongation factor Tu GTP binding domain 614 815 IPR000795 GO:0003924|GO:0005525
Lele19g0472 1013 Pfam Protein kinase domain 110 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0472 1013 SUPERFAMILY Translation proteins 819 915 IPR009000 -
Lele19g0472 1013 CDD EFTU_II 825 911 IPR033720 -
Lele19g0472 1013 TIGRFAM EF-Tu: translation elongation factor Tu 606 1013 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele19g0472 1013 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 655 670 IPR031157 -
Lele19g0472 1013 Hamap Elongation factor Tu [tuf]. 605 1013 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele19g0472 1013 Gene3D Translation factors 820 948 - -
Lele19g0472 1013 ProSiteProfiles Protein kinase domain profile. 82 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0472 1013 Gene3D Transferase(Phosphotransferase) domain 1 181 357 - -
Lele19g0472 1013 PRINTS GTP-binding elongation factor signature 618 631 IPR000795 GO:0003924|GO:0005525
Lele19g0472 1013 PRINTS GTP-binding elongation factor signature 698 709 IPR000795 GO:0003924|GO:0005525
Lele19g0472 1013 PRINTS GTP-binding elongation factor signature 735 744 IPR000795 GO:0003924|GO:0005525
Lele19g0472 1013 PRINTS GTP-binding elongation factor signature 682 692 IPR000795 GO:0003924|GO:0005525
Lele19g0472 1013 PRINTS GTP-binding elongation factor signature 662 670 IPR000795 GO:0003924|GO:0005525
Lele19g0472 1013 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 366 407 IPR024678 GO:0004674|GO:0005524
Lele19g0472 1013 Pfam Elongation factor Tu C-terminal domain 912 1011 IPR004160 -
Lele19g0472 1013 SMART serkin_6 109 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0472 1013 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 912 1012 IPR009001 -
Lele19g0472 1013 CDD EF_Tu 615 817 IPR041709 -
Lele19g0472 1013 FunFam Elongation factor Tu 820 948 - -
Lele19g0472 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lele19g0472 1013 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 614 818 IPR000795 GO:0003924|GO:0005525
Lele19g0472 1013 SUPERFAMILY Protein kinase-like (PK-like) 110 571 IPR011009 -
Lele19g0472 1013 CDD EFTU_III 914 1008 - -
Lele19g0472 1013 TIGRFAM small_GTP: small GTP-binding protein domain 617 749 IPR005225 GO:0005525
Lele19g0472 1013 Pfam Elongation factor Tu domain 2 839 907 IPR004161 GO:0005525
Lele19g0472 1013 FunFam probable serine/threonine-protein kinase WNK9 179 357 - -
Lele19g0472 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 840 IPR027417 -
Lele19g0472 1013 FunFam Elongation factor Tu 605 817 - -
Lele19g0472 1013 Gene3D Phosphorylase Kinase; domain 1 78 177 - -
Lele19g0472 1013 FunFam Probable serine/threonine-protein kinase WNK1 79 177 - -
Lele19g0472 1013 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 79 536 - -
Lele19g0472 1013 Gene3D - 606 817 IPR027417 -
Lele19g0472 1013 CDD STKc_WNK 111 352 - -
Lele19g0472 1013 FunFam Elongation factor Tu 952 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0472 Lele-ChrLele19 2681248 2686046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0472 82 407 MAP Kinase Kinase Kinase AT5G58350 50.262 1.77e-116 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lele19g0472 Pkinase 1.7e-41 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0472 19 2681248 2686046 Lele21g1746 21 25249584 25251657 CCT
Lele19g0472 19 2681248 2686046 Lele23g0263 23 1806059 1807878 CCT
Lele19g0472 19 2681248 2686046 Lele24g1687 24 22236593 22237970 CCT
Lele17g1087 17 21307545 21312448 Lele19g0472 19 2681248 2686046 hybridization
Lele18g0452 18 2644256 2645707 Lele19g0472 19 2681248 2686046 hybridization