LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele19g0457	ATGGCTCTCCCTCCTGCAAAATCACACCTCTCATTACTCTTTTCATTATTCTCTCTTTTCTTCATCCTTCATGCCAAAGTTGATATCGATCCTTCAGATCTCAAGGCATTCTTGACGTTTCAGAAGGACTTGGGCTTCAATGGTCAACACCAACCGTTTACCGCACACCCATGTGACACCGATGGTGTGTTCTGCGAGAGGAGGCTCTCCGGCAATGAGAGCTATGTTCTCAGAATCACCAGGATCATCTTCAAGTCTAAGAAGCTTAATGGGGTTTTGTCCCCGGCGATTGGCCGTCTCTCTGAGCTCAAGGAACTTTCTCTTTCCGACAACCAACTCGGGAGTCAAATTCCAACTCAGATAGTTGACTGTCGTAAGCTGGAAATTCTTGACCTCGGAAACAACCGCTTCTCCGGCGAGGTCCCTTCTGAATTGTCCTCCCTCATTCGCCTCCGAGTCCTTGACATATCTTCCAACAAATTCTCTGGGAATTTGAATTTCTTGAAGTATTTCCCCAACCTGGAAAGTCTCTCCGTGGCGGACAATCCCTTCACCGGCAGAATTCCAGCGTCCATACGTTCATTTCGCAATCTCCAACGCTTCAACTTTTCTGGGAATCACTTCCTTGAAATTCCTGCGCCATTGATGAAGAGATTTGGACACTCAGCCTCTGACCAAATCCCCAAAAGATACATCCTTACAGAGAATTCAGCCCCAACAACAAGTCACACGACTTCTGCTCATGCTCCAAAATCCAGCAAGAACCACTCTAATATTTCAGCTGCTCCAGCTCAAGCTCCAACAGCACAACATCATGGACACGAGCCAAAGAGGAAACTAGGTGGATGGATTCTTGGATTCATAGCAGGAGCATTCGCTGGGAGCATATCTGGATTCATATTTTCTTTGATGTTCAAGCTGGCCGTAGCTTTGATCAAAGGAGGAGGGAAGAGCACGGGCCCTGCAATTTATAGTCCATTGATTAAAAAGGCAGAGGACTTAGCTTTTCTGGAGAAAGAAGATGGAATGAATTCATTAGAAATCATTGGAAGAGGTGGCTGTGGAGAAGTTTACAAGGCCGAAATACCAGGAAGCAACAAAATTGTCGCTATAAAGAAGGTCAATCAACCTTCAAAAGATGCGGTCGAACTTTCTGAAGAAGACAGTAAGGTTCTGAACAAAAAAATGCGTCAAATTCGATCAGAGATCAACACGGTAGGCCAAATTCGACACCGAAACCTTCTACCTCTTCTAGCTCATGTGTCAAGGCCCGATTGCCACTACCTTGTATATGAATACATGAAGAATGGAAGTTTACAAGATGTGCTGAATCAAGTTCAAGCAGGCACAAAAGAGTTAGATTGGGTGGCACGTCACAAGATTGCAGTCGGTGTTGCAGCTGGCCTCGAGTACCTGCACATGCACCATACTCCTCGTATCATTCACAGAGATCTCAAGCCCGGAAATATTCTTCTTGACGATGATATGGAAGCTCGAATTGCAGATTTTGGGCTCGCAAAAGCAATGCCAGAAGCTCATACACATGTCTCAACTTCAAACGTGGCTGGAACTGTGGGCTACATAGCACCAGAATATCACCAGACAGTGAAGTTCACTGACAAGTGTGACATATACAGCTTTGGGGTTGTGCTTGGAATCTTGGTGATGGGAAAGATTCCATCTGATTCGTTCTTTCAGGACACAGAGGAGCTGAGTTTGGTGAAGTGGATGAGGAATGTGATGACGTCAGACAACCCTACAAGGGCTATTGACGAAAAGCTGAGAGGGAATGGATATGAGGAACAGATGCTTCTGGTTCTGAAGATTGCCTGCTTTTGCACTCTCGATGATCCAAAGGAGAGGCCTAACAGTAAGGATATCAGATGCATGTTGTCCCAAATCAAACACTGA	1911	0.4553	MALPPAKSHLSLLFSLFSLFFILHAKVDIDPSDLKAFLTFQKDLGFNGQHQPFTAHPCDTDGVFCERRLSGNESYVLRITRIIFKSKKLNGVLSPAIGRLSELKELSLSDNQLGSQIPTQIVDCRKLEILDLGNNRFSGEVPSELSSLIRLRVLDISSNKFSGNLNFLKYFPNLESLSVADNPFTGRIPASIRSFRNLQRFNFSGNHFLEIPAPLMKRFGHSASDQIPKRYILTENSAPTTSHTTSAHAPKSSKNHSNISAAPAQAPTAQHHGHEPKRKLGGWILGFIAGAFAGSISGFIFSLMFKLAVALIKGGGKSTGPAIYSPLIKKAEDLAFLEKEDGMNSLEIIGRGGCGEVYKAEIPGSNKIVAIKKVNQPSKDAVELSEEDSKVLNKKMRQIRSEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEYMKNGSLQDVLNQVQAGTKELDWVARHKIAVGVAAGLEYLHMHHTPRIIHRDLKPGNILLDDDMEARIADFGLAKAMPEAHTHVSTSNVAGTVGYIAPEYHQTVKFTDKCDIYSFGVVLGILVMGKIPSDSFFQDTEELSLVKWMRNVMTSDNPTRAIDEKLRGNGYEEQMLLVLKIACFCTLDDPKERPNSKDIRCMLSQIKH	636

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele19g0457	636	Gene3D	Phosphorylase Kinase; domain 1	343	437	-	-
	Lele19g0457	636	Pfam	Protein kinase domain	345	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele19g0457	636	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	76	635	-	-
	Lele19g0457	636	Gene3D	Ribonuclease Inhibitor	33	167	IPR032675	-
	Lele19g0457	636	Gene3D	Ribonuclease Inhibitor	168	224	IPR032675	-
	Lele19g0457	636	SUPERFAMILY	Protein kinase-like (PK-like)	339	631	IPR011009	-
	Lele19g0457	636	SUPERFAMILY	L domain-like	73	215	-	-
	Lele19g0457	636	ProSiteProfiles	Protein kinase domain profile.	343	636	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele19g0457	636	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	480	492	IPR008271	GO:0004672\|GO:0006468
	Lele19g0457	636	FunFam	Leucine-rich repeat receptor-like protein kinase	434	636	-	-
	Lele19g0457	636	Pfam	Leucine rich repeat	102	161	IPR001611	GO:0005515
	Lele19g0457	636	MobiDBLite	consensus disorder prediction	235	265	-	-
	Lele19g0457	636	MobiDBLite	consensus disorder prediction	235	275	-	-
	Lele19g0457	636	Coils	Coil	382	402	-	-
	Lele19g0457	636	SMART	serkin_6	343	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele19g0457	636	Gene3D	Transferase(Phosphotransferase) domain 1	438	636	-	-
	Lele19g0457	636	FunFam	Leucine-rich repeat receptor protein kinase EMS1	73	168	-	-
	Lele19g0457	636	CDD	STKc_IRAK	349	634	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele19g0457	Lele-ChrLele19	2627189	2629099	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele19g0457	1	636	Receptor kinase-like Gene Family	AT2G31880	62.366	0.0	811

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-2	Lele19g0457		Pkinase	3.7e-46	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele17g1102	17	21361659	21363569	Lele19g0457	19	2627189	2629099	hybridization
	Lele18g0438	18	2579478	2581388	Lele19g0457	19	2627189	2629099	hybridization