Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0449 ATGACAACCCCTTCCATCTCTCTGCTCTTCTTTCTCTCCTTTCTTCTCTGCATAACCCTCATTTCCTCCAGAGCACTCCCCCAAGACCCAGAATTGGTAGTACAAGAAGTGAACAGGAAGATTAATGCTTCTATGGCGAGGAGGAACTTGGGGTACCTATCCTGTGGTACAGGCAACCCCATTGATGACTGCTGGAGGTGTGAACCCGACTGGGAGAATAACAGGCAGAAGCTAGCCGATTGTGCAATTGGGTTCGGGAAGAATGCTGTTGGGGGCAAGGACGGTCAGATTTACGTGGTGACGGACTCCGGCGACGACGACCCGGTGAACCCGAAGCCGGGGACTCTCCGGTACGCCGTGATCCAAGACGACCCGTTGTGGATCATATTTGCCAGAGACATGACGATCCAGCTGAAAGAAGAGCTGATAATGAACTCGTTCAAGACCATCGACGGCAGAGGAGCGAGCGTGCATATTGCGGGTGGTCCATGCATTACGATCCAGTACGTGACCAACATTATAATCCACGGAATTAACATCCATGACTGTAAGCAAGGTGGGAACACTATGGTGAGGGACTCCCCACGGCACTACGGGTGGAGGACGGTATCGGACGGCGACGGCGTGTCCATCTTCGGAGGGAGCCACGTATGGGTGGACCATTGCTCCTTGTCGAATTGCAACGACGGGCTGATCGATGCGATTCATGGGTCCACCGCAATTACAATCTCCAACAATTATATGACACACCACGACAAGGTCATGTTATTGGGTCACAGTGATTCCTATACACAGGACAAGAACATGCAAGTCACTATAGCCTTTAATCACTTCGGAGAAGGGCTAATTCAGAGAATGCCAAGATGTAGGCATGGATATTTCCATGTTGTGAACAATGACTACACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAAGGCAACAGATTTGTAGCACCCGATGACAGATTCAGCAAAGAGGTGACGAAGCATGAGGATGCGGCGGAGAGCGAGTGGAAGAACTGGAACTGGAGGTCGGAAGGGGACTTGTTGGTAAACGGTGCTTTTTTCACGGCGTCGGGAGCCGGAGCGTCGTCAAGCTATGCGAGGGCTTCGAGTCTGAGTGCGAGGCCATCTTCACTTGTGGCTACGATCACCGGAGGCGCCGGTACACTTAGCTGCCGGAAAGGTTCTGGTTGCTGA 1224 0.5212 MTTPSISLLFFLSFLLCITLISSRALPQDPELVVQEVNRKINASMARRNLGYLSCGTGNPIDDCWRCEPDWENNRQKLADCAIGFGKNAVGGKDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDDPLWIIFARDMTIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAAESEWKNWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVATITGGAGTLSCRKGSGC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0449 407 SMART amb_all 133 330 IPR002022 -
Lele19g0449 407 SUPERFAMILY Pectin lyase-like 39 401 IPR011050 -
Lele19g0449 407 Gene3D - 58 400 IPR012334 -
Lele19g0449 407 Pfam Pectate lyase 143 324 IPR002022 -
Lele19g0449 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Lele19g0449 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Lele19g0449 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Lele19g0449 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Lele19g0449 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Lele19g0449 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Lele19g0449 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Lele19g0449 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Lele19g0449 407 FunFam Pectate lyase 58 400 - -
Lele19g0449 407 PANTHER PECTATE LYASE 18-RELATED 24 405 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0449 Lele-ChrLele19 2582324 2583754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0449 8 407 Polysaccharide Lyase AT5G63180 81.436 0.0 676