Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0448 ATGTCTCAATCTTATCCCATTAGTCTGTTCCTCCTCATTGCAGCTGCAAAACTTCTCTGGAATGATCTTTCGGGGATATGGTCTATGAAGCTCGAGGGATTTTGTCTGAGGAGGTGCAATCTTCGTCAACGATACTGCTCGAAACGCCAAAGCGAAGGAATGCCCGAGCCAATGGAACCTCAGAATCATGTTTTGCTTCCAAAACCGGAGTTGGGAGCAGCAGACAGCTCGAAGGTTCTCCAGCCTCCGAAGCTCGTGGTCTTGGCTGACCTCAACGTCGATCCTCCCGAAGCAGATGAGGATGATTCCCCACATGTGCCTCCGCCAGAAATTACCATGTTAACAAATGAAAAAAGTCAAGCGAAGAGTATTTTGTCCAAAGACACCGATAGCGCTGATGGTGAAGGTAAAAAGTTGCACAAACTGGGGAAGTGCCGCTCCAGATTTAGTAAGGCAGATTCTTCTGTTGATTGTGGAGCTGATGGAGATGGTGATCAGCATGTTCAAGGGGTTACTTCCTCTCGAGAGGAAAAAGTTAGCAGTCTGAAGACTGGCTTGGTTCATGTTGCAAGGAAGATGCCCAAAAATGCACATGCTCATTTCATACTTGGCCTAATGTACCAACGGTTGGGCCAACCTCAAAAGGCTCTATCGGCATATGAGAAGGCTGCAGAGATCTTACTTCGGTCTGAGGCTGAGATTAGTCGGCCAGAGTTGCTTTCTTTGGTTCAAATTCACCATGCACAGTGCCTGATACTAGAAAGTGCAGTGGAAAATAGTTCAGATAAAGAACTTGAACCTCAAGAACTTGAGGAAATTCTCTCCAAACTAAAGGAGTCTGTGCAATCAGATATCAGGCAGGCAGCTGTATGGAATACCCTAGGATCTGTACTTCTTAAAACTGGCCGTTTGCAGAGTGCGATCACAGTACTGTCATCGTTGTTGGCCATTGCACCAGACAACTATGATTGCCTGGGAAATCTTGGGATTTCTTATCTTCAAAGTGGGAATTTGGAATTATCTGCAAAATGTTTCCAAGAGTTGATTCTAAAAGATCAAAATCATCCTGGAGCTTTGATCAACTATGCTGCCCTTCTTTTATGTAAATATGCTTCAGTTGTAGCAGGTGCTGGTGCAAGTGCTCCAGAAGGTGCTTCTGTAGACCAGGTTGCAGCTGTTAATGTTGCAAAGGAATGTTTGCTAGCTGCAGTAAAAGCAGATCCCAAATCAGGACATATCTGGACAAATCTTGCCAATGCATTTTCTCTGTGTGGTGATCGCAGAAGTTCCAGCAAGTGCTTGGAGAAGGCCGCAAGACTGGATCCCAATTGCATGTCTACTCGATATGCTGTTGCCATCCATAGAATAAAGGATGCTGAAAGATCTCTAGATCGGGAGCAGCTTTCATGGGCTGGAAATGAGATGGCGTCTATAATAAGAGATGGTGATTCATCCTTGGTTGAGCTTCCCGTAGCATGGGGTGGGCTTGCCATGGTTCACAAGGCCCAGCATGAAATAGCAGCTGCTTTTGAAACTGAACAGCATGACCTGATGGAAGTTGAAGAGCGTGCTGTTTGCATTTTAAAACAGGCTATAGCAGAAGATCCCGATGATGCTGTGCCATGGCACCAACTTGGTCTTCATGGTCTCTGTGCTCGGCAATTCAAAACATCTCAAAGGTACCTCAAAGCTGCTGTTGCCCGTGACAAGAATAGTAGCTATGCATGGTCAAATCTAGGCGTTTCACTTCAACTATCAGAAGAACCATCAAAAGCTGAAGAAGTATATAAGCAGGCCTTGGCACTGGCGACAACACAACAAGCGCATGCTACATTATCGAACCTGGGGAATCTCTATCGGCAGCAGAAAAAATATCAACGTGCCAAGGCAATGTTTACAAAGTCACTTGAACTACAACCTGGCTACGCTCCTGCATATAACAATCTGGGTCTTGTTTTTGTTGCCGAGGGTCTGTGGGAAGAGGCAAAGTATTGTTTTGACAAGGCCCTCCAATCAGATCCATTACTTGATGCTGCAAAATCTAACGGGATTAAGGCGGTCACCATGGCAAAGTTATGCAGAGGCCTCTCCTCATGCAATCTTAAAGAATAA 2112 0.4545 MSQSYPISLFLLIAAAKLLWNDLSGIWSMKLEGFCLRRCNLRQRYCSKRQSEGMPEPMEPQNHVLLPKPELGAADSSKVLQPPKLVVLADLNVDPPEADEDDSPHVPPPEITMLTNEKSQAKSILSKDTDSADGEGKKLHKLGKCRSRFSKADSSVDCGADGDGDQHVQGVTSSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKALSAYEKAAEILLRSEAEISRPELLSLVQIHHAQCLILESAVENSSDKELEPQELEEILSKLKESVQSDIRQAAVWNTLGSVLLKTGRLQSAITVLSSLLAIAPDNYDCLGNLGISYLQSGNLELSAKCFQELILKDQNHPGALINYAALLLCKYASVVAGAGASAPEGASVDQVAAVNVAKECLLAAVKADPKSGHIWTNLANAFSLCGDRRSSSKCLEKAARLDPNCMSTRYAVAIHRIKDAERSLDREQLSWAGNEMASIIRDGDSSLVELPVAWGGLAMVHKAQHEIAAAFETEQHDLMEVEERAVCILKQAIAEDPDDAVPWHQLGLHGLCARQFKTSQRYLKAAVARDKNSSYAWSNLGVSLQLSEEPSKAEEVYKQALALATTQQAHATLSNLGNLYRQQKKYQRAKAMFTKSLELQPGYAPAYNNLGLVFVAEGLWEEAKYCFDKALQSDPLLDAAKSNGIKAVTMAKLCRGLSSCNLKE 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0448 703 ProSiteProfiles TPR repeat profile. 288 321 IPR019734 GO:0005515
Lele19g0448 703 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 80 700 - -
Lele19g0448 703 Pfam Tetratricopeptide repeat 412 444 IPR019734 GO:0005515
Lele19g0448 703 ProSiteProfiles TPR repeat profile. 609 642 IPR019734 GO:0005515
Lele19g0448 703 MobiDBLite consensus disorder prediction 117 138 - -
Lele19g0448 703 SUPERFAMILY TPR-like 194 446 IPR011990 GO:0005515
Lele19g0448 703 SUPERFAMILY TPR-like 399 674 IPR011990 GO:0005515
Lele19g0448 703 SMART tpr_5 609 642 IPR019734 GO:0005515
Lele19g0448 703 SMART tpr_5 411 444 IPR019734 GO:0005515
Lele19g0448 703 SMART tpr_5 573 606 IPR019734 GO:0005515
Lele19g0448 703 SMART tpr_5 197 230 IPR019734 GO:0005515
Lele19g0448 703 SMART tpr_5 322 355 IPR019734 GO:0005515
Lele19g0448 703 SMART tpr_5 288 321 IPR019734 GO:0005515
Lele19g0448 703 SMART tpr_5 643 676 IPR019734 GO:0005515
Lele19g0448 703 Gene3D Tetratricopeptide repeat domain 245 517 IPR011990 GO:0005515
Lele19g0448 703 Pfam Tetratricopeptide repeat 197 226 IPR013105 -
Lele19g0448 703 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Lele19g0448 703 Pfam Tetratricopeptide repeat 298 356 - -
Lele19g0448 703 Pfam Tetratricopeptide repeat 575 639 - -
Lele19g0448 703 MobiDBLite consensus disorder prediction 154 177 - -
Lele19g0448 703 Gene3D Tetratricopeptide repeat domain 611 674 IPR011990 GO:0005515
Lele19g0448 703 Gene3D Tetratricopeptide repeat domain 183 244 IPR011990 GO:0005515
Lele19g0448 703 Gene3D Tetratricopeptide repeat domain 522 610 IPR011990 GO:0005515
Lele19g0448 703 ProSiteProfiles TPR repeat region circular profile. 643 674 - -
Lele19g0448 703 ProSiteProfiles TPR repeat profile. 643 676 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0448 Lele-ChrLele19 2568186 2576376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0448 524 675 Glycosyltransferase AT3G04240 27.451 1.73e-11 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1112 17 21426275 21442036 Lele19g0448 19 2568186 2576376 hybridization
Lele18g0430 18 2520484 2526335 Lele19g0448 19 2568186 2576376 hybridization