Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0446 ATGGCAGGTTCAGCTGCTCTGGCTTCAGAGCCCAACGCAGATGTGTTTCCATGGCTGAAATCTCTGCCTCTCGCTCCAGAGTACCATCCAACTTTGGCTGAGTTCCAAGATCCAATTGCATACATTTTTAAGATCGAAAGGGAGGCCTCCAAGTATGGAATCTGCAAAATCGTGCCCCCCGTGCCGCCTTCTCCAAAGAAGACTGCAATTGCGAATCTTAATCGCTCTCTGGCGGCCCGAGCTGCTTCCTCTGACTCTTCTGGTTCGAAAGCTCAGCCTGCATTCACCACAAGGCAGCAGCAGATCGGCTTCTGCCCTCGGAGACCGCGGCCCGTGCAGCGTCCTGTTTGGGAAAGTGGCGAGTACTACACATTTCAGGAATTCGAGGCCAAGGCCAGGGCTTTTGAGAAGAGTTACCTGAAAAAATGTGCAAAGAAAGGTGCGCGTTCACCACTGGAAATAGAAACGCGTTATTGGAAGGCGATAGTGGATAAACCCTTCTCTGTTGAGTATGCAAACGACATACCTGGTTCTGCTTTTGTTCCCCTGAATGGGAGAAAATGCAGAGAGACAGGGGAGAGTGTTAACGTTGGCGACACTGCGTGGAACATGAGAGGCGTGTCAAGGGCAAATCGCTCTTTGTTGAGGTTCATGAAGGAGGAGATTCCTGGAGTCACATCGCCAATGGTGTACGTAGCTATGTTGTTCAGCTGGTTTGCTTGGCACGTTGAGGATCATGACTTGCATAGCTTGAATTACCTACACATGGGGTCAGGCAAGACGTGGTATGGCGTGCCAAGGGATGCAGCAGTAGCATTTGAGGAAGTGGTCAGAGTTGATGGTTATGGAGGAGAACTAAACCCTCTCGTGACTTTTTCTACTATGGGTCAGAAAACCACAGTGATTTCTCCTGAAGTATTTATTAGTGCTGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACATTTCCAAGAGCCTATCATACAGGGTTTAGTCATGGATTTAATTGTGGGGAGGCAGCTAACATTGCAACACCTGAGTGGTTGAGGGTTGCAAAAGATGCTGCTGTTCGAAGGGCATCGATAAACTATCCTCCCATGGTTTCACATTTCCAATTACTTTATGACCTTGCTCTAGCTTTGTGTACTAGAATTCCTGACAGAATCAGTGCTGAGCCACGGAGTTCTCGACTTAAAGATAAGAGGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTATCCAGGATGTGCTGCAAAACAATGAGCTGCTTCATGTGCTTGGGAAAGGATCTGCTATAGTAATTCTTCCTCAGAGCTCTTCTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAAATAAATGTGAACCCTCAGTATGCCCTCAGTGCATGCAAGTCTGAAGGAGTAAACTCCTCAATAGGTTTTGTTTCTGATGACCTGGCTTACCAAAGGAATCATGGAATCAAACAAGCCAACGATTTCTATTCAGTAAAAGAAAAGTTTGCTTCATTGTGTGAAAGGACCAGGATTTCCTCGTTAACGGTAAACGATAACACATGCACCTCAAGTTTTAAGACTCTGCAAAGAGACACTGAAAAAGAAACAAATCAAAGAGATGGCTTGTCAGATCAGAGACTATTTTCATGCGTCACATGTGGAATGTTAAGCTTTGCCTGTGTTGCTATTGTAAAGCCTAAAGAACCGGCTGCTAGATGCCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGCACTTTCCATGTTATTATATGGTTATCAGAAAATGTGTCCAATGTATCTTCCTCATTTCTTTTGTATGCATAAAGAGCTATTCAAGCAGCTAAATGCCTATGATATTACCTCTGCTTTTTATCCACCAAAAGTTTGCCAGATACTTTACTCAGCATTGTACTTTCGTCATGCAGGATGGACAAAAAAGAATGCCCAAAATGGTGTATATGGTGTTCCTGTCCAGGTGGAACACCACATGCAGATTGCAGATCAAGACTTGAAGGGGGCTTCAAATACTGGAAAACAAAAGGAAACTACAGCTCTTGGCTTATTGGCTTCCGCATATGGAAATTCTTCTGACTCTGAGGAAGACCAGGTTGACCCAAATACCGGATGTGATGATGATGAATCAGATGTTATAAACTATTCATCCGGAAGTAGACCCCAAAGGGAGATATTTAGTTTTCCCCGGGGGAGTCATCAGACTTTTGATTACCCTGTTGAGACGAAAGATTATAGTATCACCTCAGGGGTTGGATTTAGAAGTACAGGGGCATTGCCTCATTCCTACTTGAATTGTTCCCTTGATGTTCAAGATGCTGAAACATTCATGTGCAAGGCTAGAGTTCCCATTGATAATAAAAATGTTCCATTTGTGCCACAATCTGATGAAGACTCATCTAGAATGCATATCTTCTGTCTGGAGCATGCTGCAGAAGTCGAACAACAACTTCATCCAATAGGAGGATCACACATATTACTCCTTTGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGCTTGTGGCCGAAGAATTGGGGAATGATTATGCTTGGAAGAATATTGAATACAGGCATGCTACTGAAGAGGATGAGGAGAGGATTGAATCATCACTTGATAGTGAGGAAGCTGTTCCTGGTAATGCAGACTGGGCTGTAAAACTGGGAATCAATCTCTTTTATAGCGCCAATCTTAGCCGCTCTCCTTTGTATAGTAAGCAGATGCCTTACAATTCTGTTATATATAATGCATTTGGATTTAGCTCTCCAGAAAACTCAGCTACCGAGCCCAAGGTTTATCAGAGGAGGGTCAACAAGCAGACAAAGGTAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCTCTTTTAGCAAAAAGAGACTCTGCAGATGGTGAGGATGAAAAAGGATTACATGGGTGTTCATTACCTGATGAGAAAATTGAGAGGTCAGAAAGTAGCCACAGAAACAATATTGCCAATAGAAAATCTGTTAAGAAAAGGAAAATGACTGTAGAAGACAGAGGAGCCAGGAAAGCAGCTTTTGCTGACAGAGATGTGTTTTCAGATAATTCATTTGAAGATAAACCCAACCCACGGCAAAGGAGGATTTTTAGAAATAAGCAAGCCAAATATATCGTAAGAGGTGGTGATGCTTTGGAAGGGGAATATTCTGCACTGGCACGGCATGGAAAACGTACAAGTAACAAAAAATGTATTGAAAACAATACGGTTTCAGATGATTCGCTGGATGATAATTCTCCTACGCAGCACAGGAGAAATGTTGTCAATGAAGATAAATCTTTTGATGAGGATGTGTTTTCAGATGATAAAATAGAATATGACTCTGATTGGCAGCAGAGGGGTGAAGCTAGTGGCAAGCGAGTCAAAGATGCAGAGAGAGATGCAATGTCAGGGGATTCATTGGATGGTTGTTTTCTTCAGCTGAATAGGAAGACTTGTAAACGAAAGCAAGCCGAATACATTGGTGAAGAAGATGTAACTTCTGATAGTCCAATGGAGGATCATTTTCAGAAGAGGCGATTCAGTATTTCCAAAAGCAGACAAACCAAATGCTTTTCTGCGGTAGATTTATTAGCATCCGATTACCGACAGGAGCATCACACTCAGAAGCAAAAACAAAGGATTCTCAAAAGCAGGCAAGCGGGATACCTTGCTGGAAAGGATACTATATCTAATGAGAGACTTGAAAATTCTTTTCTTAAGTATCAAAGAAGGACTTCTAAAAGCAGGCAAGCAAAATGCCTAATTAAGGAAGATGTAATGTCTGATGATGATGACCATTTAGAGCATCAAGTTCAGAAGAAGCAAAAAAGTGCTCCTAGGAGCAGACAAAAGAAATGCATTAATAGAGGAGTTTTGGATTTCTCCATTGAAAATGATCATCTGCTGCAAAACACGCCAAATAGGAAGCAAGTTAAATGCATGGCTGAAGATGACAGTAATTCGGATGATCAAGTGGAGGGTGATTCTCACCAGCAGCACAGGAGGCTTCTTCGAAGTAATCAACTCAAGTCAGACACACTGAGGCAAATTAAACACGCTAAACCTCGCAGTGTGAAAAGCCAGACATCCCCATTTGCAAAACACAGTACTCGGCTTCTTGTTAAAGTGAAGGCTTCTCGGCAAATGAAGCAGTGCCCCCGTGTGCGAAATAATCAATCCAATAGCTACAGAGAGTTTAGTTTACATATTGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCCCAAAAGTTGACGAGTCTGAGGCAAGACCAAAAGAAAAGCAAACTAAAAGGAAAAAGTTGAAGAATGCCGTGCCTGCGAAGGTTTCAGCTGGCCATGCTAAATTAAAGGATAAGGAGATAGATGCATATTATCAATGTGACATTGAGGGGTGCACCATGAGTTTTGGGTCCAAACAGGAGCTTGTGCTGCATAAGAGAAACATCTGTCCAGTAAAGGATTGTGGAAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACCGTCGAGTCCACATGGATGATCGGCCCCTGAAGTGTCCTTGGAAGGGCTGCAAGATGACTTTCAAGTGGGCATGGGCACGCACTGAACATATTCGAGTTCACACTGGTGCTCGTCCATATGCTTGTGCTGAGCCTGGCTGTGGGCAGACATTTAGGTTTGTGTCTGACTTTAGTCGCCATAAGCGAAAGACTGGCCATTCAACAAAGAAGAGTCGCAAATAA 4809 0.4325 MAGSAALASEPNADVFPWLKSLPLAPEYHPTLAEFQDPIAYIFKIEREASKYGICKIVPPVPPSPKKTAIANLNRSLAARAASSDSSGSKAQPAFTTRQQQIGFCPRRPRPVQRPVWESGEYYTFQEFEAKARAFEKSYLKKCAKKGARSPLEIETRYWKAIVDKPFSVEYANDIPGSAFVPLNGRKCRETGESVNVGDTAWNMRGVSRANRSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEEVVRVDGYGGELNPLVTFSTMGQKTTVISPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAVRRASINYPPMVSHFQLLYDLALALCTRIPDRISAEPRSSRLKDKRKGEGETVIKELFIQDVLQNNELLHVLGKGSAIVILPQSSSDISVCSKLRVGSQQINVNPQYALSACKSEGVNSSIGFVSDDLAYQRNHGIKQANDFYSVKEKFASLCERTRISSLTVNDNTCTSSFKTLQRDTEKETNQRDGLSDQRLFSCVTCGMLSFACVAIVKPKEPAARCLMSADCSFFNDWVALSMLLYGYQKMCPMYLPHFFCMHKELFKQLNAYDITSAFYPPKVCQILYSALYFRHAGWTKKNAQNGVYGVPVQVEHHMQIADQDLKGASNTGKQKETTALGLLASAYGNSSDSEEDQVDPNTGCDDDESDVINYSSGSRPQREIFSFPRGSHQTFDYPVETKDYSITSGVGFRSTGALPHSYLNCSLDVQDAETFMCKARVPIDNKNVPFVPQSDEDSSRMHIFCLEHAAEVEQQLHPIGGSHILLLCHPDYPKIEAEAKLVAEELGNDYAWKNIEYRHATEEDEERIESSLDSEEAVPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGFSSPENSATEPKVYQRRVNKQTKVVAGKWCGKVWMSNQVHPLLAKRDSADGEDEKGLHGCSLPDEKIERSESSHRNNIANRKSVKKRKMTVEDRGARKAAFADRDVFSDNSFEDKPNPRQRRIFRNKQAKYIVRGGDALEGEYSALARHGKRTSNKKCIENNTVSDDSLDDNSPTQHRRNVVNEDKSFDEDVFSDDKIEYDSDWQQRGEASGKRVKDAERDAMSGDSLDGCFLQLNRKTCKRKQAEYIGEEDVTSDSPMEDHFQKRRFSISKSRQTKCFSAVDLLASDYRQEHHTQKQKQRILKSRQAGYLAGKDTISNERLENSFLKYQRRTSKSRQAKCLIKEDVMSDDDDHLEHQVQKKQKSAPRSRQKKCINRGVLDFSIENDHLLQNTPNRKQVKCMAEDDSNSDDQVEGDSHQQHRRLLRSNQLKSDTLRQIKHAKPRSVKSQTSPFAKHSTRLLVKVKASRQMKQCPRVRNNQSNSYREFSLHIEEEEEGGPSTRLRKRAPKVDESEARPKEKQTKRKKLKNAVPAKVSAGHAKLKDKEIDAYYQCDIEGCTMSFGSKQELVLHKRNICPVKDCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYACAEPGCGQTFRFVSDFSRHKRKTGHSTKKSRK 1602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0446 1602 ProSitePatterns Zinc finger C2H2 type domain signature. 1541 1563 IPR013087 -
Lele19g0446 1602 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Lele19g0446 1602 FunFam Probable lysine-specific demethylase ELF6 1536 1565 - -
Lele19g0446 1602 MobiDBLite consensus disorder prediction 1424 1455 - -
Lele19g0446 1602 Gene3D Cupin 18 369 - -
Lele19g0446 1602 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1535 - -
Lele19g0446 1602 SUPERFAMILY Clavaminate synthase-like 187 379 - -
Lele19g0446 1602 ProSiteProfiles Zinc finger C2H2 type domain profile. 1539 1568 IPR013087 -
Lele19g0446 1602 ProSitePatterns Zinc finger C2H2 type domain signature. 1511 1533 IPR013087 -
Lele19g0446 1602 SUPERFAMILY beta-beta-alpha zinc fingers 1525 1567 IPR036236 -
Lele19g0446 1602 SMART JmjN_1 24 65 IPR003349 -
Lele19g0446 1602 MobiDBLite consensus disorder prediction 1106 1121 - -
Lele19g0446 1602 SMART c2h2final6 1486 1508 IPR013087 -
Lele19g0446 1602 SMART c2h2final6 1539 1563 IPR013087 -
Lele19g0446 1602 SMART c2h2final6 1569 1595 IPR013087 -
Lele19g0446 1602 SMART c2h2final6 1509 1533 IPR013087 -
Lele19g0446 1602 ProSitePatterns Zinc finger C2H2 type domain signature. 1571 1595 IPR013087 -
Lele19g0446 1602 MobiDBLite consensus disorder prediction 1338 1393 - -
Lele19g0446 1602 FunFam Probable lysine-specific demethylase ELF6 1566 1595 - -
Lele19g0446 1602 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Lele19g0446 1602 ProSiteProfiles Zinc finger C2H2 type domain profile. 1569 1600 IPR013087 -
Lele19g0446 1602 Gene3D Classic Zinc Finger 1508 1593 - -
Lele19g0446 1602 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Lele19g0446 1602 MobiDBLite consensus disorder prediction 704 725 - -
Lele19g0446 1602 ProSiteProfiles Zinc finger C2H2 type domain profile. 1509 1538 IPR013087 -
Lele19g0446 1602 MobiDBLite consensus disorder prediction 1424 1467 - -
Lele19g0446 1602 SMART cupin_9 196 365 IPR003347 -
Lele19g0446 1602 MobiDBLite consensus disorder prediction 1095 1121 - -
Lele19g0446 1602 MobiDBLite consensus disorder prediction 981 1013 - -
Lele19g0446 1602 SUPERFAMILY beta-beta-alpha zinc fingers 1557 1591 IPR036236 -
Lele19g0446 1602 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Lele19g0446 1602 MobiDBLite consensus disorder prediction 981 1031 - -
Lele19g0446 1602 MobiDBLite consensus disorder prediction 1338 1375 - -
Lele19g0446 1602 Pfam jmjN domain 26 59 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0446 Lele-ChrLele19 2557174 2564599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0446 1169 1602 C2H2 Transcription Factor Family AT3G48430 36.184 2.88e-69 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele19g0446 JmjC 9e-35 CL0029