Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0445 ATGGATCCCTCTGAATCCGATTCAACAGCTGTTTCGCACTCCATCAAAGACCCATTATTGGGCATTGAGTTAGCTTCTTCCCTTCCCAGTTCCCATCACGATCCTGAAACGTCAGACCTCAATCCTAGGGATGAGACTGATGCCCTTCAGGAAGCCCTTGAGAACAAGTTGGATTTGAAGGATAAGGATGAAGGGGTCGAAGAGGAAAAGGAGAAGAAAGATTCGGAATTTGATGATGGTAAAGAAGTAAATGGTATAGCTGATGCCGGGGAATCTGAGAAGGAACAAGTTTTTGATGAAGTTAACCAGAATTGGAATGGAAATGAGGACGATGGTTGGGGGGAGAATGTGAACGAGAGTGAGAATTATAATTTTGGTATAGATAATGTAACTGTGGGTGATGAAGTGGAGAAGATCGATGAGCAAAGCAGCGGGAGAGCACACCAGTATCCGGTGAGGCCCGAAGCTGAAGATTGCGCGTTCTATCTCAAGACTGGAACTTGCAAGTTTGGGTTTAACTGCAAATTTAATCACCCTCTCAGGAGGAAAATCCAGAAGGGAAGAGAAAGAGAAGAATCAGGAGAAAGATCAGGGCAGACTGAATGCAAGTATTATCTAAAGTCAGGAGGTTGTAAATACGGAAAGGCTTGTAAATTTAACCACACCAGAGGAAAATGTTCTGCAACTGCAACTGCAACCACTATTTTGGAACTTAACTTTCTTGGCCTGCCGATTCGTCTGGGAGAGAAAGAGTGCCCGTATTATATGCGTACTGGGTCTTGTAAGTTTGGCGCAAACTGCAAATTCAATCATCCTGATCCTACTGTCGTTGGAGGAAGTGATCCTCCTTCAACATATGCTAATGGCGGGGCTGTTCCCTTACAAGGTGTATCGCAGCCATCCATACCCTCTTGGTCTTCTCCAAGAACATTAAATGAAACTGCTCCTTTTGTGCCAGTGATGATTCCACCTGTTCAAGGGGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCCGTCTACCTACCTGAGAGGACTATGCACCCACCATCTACATACGTTGTGAACAACCCGGCTATTGAAACAAATGTCTATATGCATCATCCTCCAAAGCAGACACAGGTCGATGAGTTTCCAGAAAGGCCTGGTGAACCAGAGTGCAGTTACTACTTAAAAACTGGGCATTGCAAATTTAAATCCAACTGTAAATTTCACCATCCAAAGAACCGTATTGCAAGACCTCCATGCACCCTAAGTGACAAGGGTCTGCCTTTGAGACCTGATCAGGGTGTGTGCTCGCACTATAGTCGCTATGGAATATGCAAATATGGGCCGTCGTGTAAGTATGACCACCCGACGAACCTATCGCCGTCAAATATGCCTGGACTTGATCAGGAATCTGCTAGCGTGGAAGTGGCTGAGATGGCTGGAAGTGGAAATTCAGGTGACTCCCCAATTAAGCAGACTGTGTAA 1479 0.4537 MDPSESDSTAVSHSIKDPLLGIELASSLPSSHHDPETSDLNPRDETDALQEALENKLDLKDKDEGVEEEKEKKDSEFDDGKEVNGIADAGESEKEQVFDEVNQNWNGNEDDGWGENVNESENYNFGIDNVTVGDEVEKIDEQSSGRAHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKIQKGREREESGERSGQTECKYYLKSGGCKYGKACKFNHTRGKCSATATATTILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTVVGGSDPPSTYANGGAVPLQGVSQPSIPSWSSPRTLNETAPFVPVMIPPVQGVSPQSSDWNGYQAPVYLPERTMHPPSTYVVNNPAIETNVYMHHPPKQTQVDEFPERPGEPECSYYLKTGHCKFKSNCKFHHPKNRIARPPCTLSDKGLPLRPDQGVCSHYSRYGICKYGPSCKYDHPTNLSPSNMPGLDQESASVEVAEMAGSGNSGDSPIKQTV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0445 492 SUPERFAMILY CCCH zinc finger 247 274 IPR036855 GO:0046872
Lele19g0445 492 SUPERFAMILY CCCH zinc finger 426 454 IPR036855 GO:0046872
Lele19g0445 492 Gene3D - 366 422 - -
Lele19g0445 492 Gene3D - 428 477 - -
Lele19g0445 492 Gene3D - 116 188 - -
Lele19g0445 492 ProSiteProfiles Zinc finger C3H1-type profile. 428 456 IPR000571 GO:0046872
Lele19g0445 492 ProSiteProfiles Zinc finger C3H1-type profile. 246 274 IPR000571 GO:0046872
Lele19g0445 492 SUPERFAMILY CCCH zinc finger 388 412 IPR036855 GO:0046872
Lele19g0445 492 MobiDBLite consensus disorder prediction 1 96 - -
Lele19g0445 492 MobiDBLite consensus disorder prediction 36 96 - -
Lele19g0445 492 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Lele19g0445 492 ProSiteProfiles Zinc finger C3H1-type profile. 383 411 IPR000571 GO:0046872
Lele19g0445 492 SUPERFAMILY CCCH zinc finger 152 180 IPR036855 GO:0046872
Lele19g0445 492 PANTHER PROTEIN PHOSPHATASE RELATED 26 468 - -
Lele19g0445 492 ProSiteProfiles Zinc finger C3H1-type profile. 196 224 IPR000571 GO:0046872
Lele19g0445 492 SUPERFAMILY CCCH zinc finger 200 225 IPR036855 GO:0046872
Lele19g0445 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 199 221 IPR000571 GO:0046872
Lele19g0445 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 433 454 IPR000571 GO:0046872
Lele19g0445 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 249 272 IPR000571 GO:0046872
Lele19g0445 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 179 IPR000571 GO:0046872
Lele19g0445 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 385 410 IPR000571 GO:0046872
Lele19g0445 492 SMART c3hfinal6 196 223 IPR000571 GO:0046872
Lele19g0445 492 SMART c3hfinal6 430 455 IPR000571 GO:0046872
Lele19g0445 492 SMART c3hfinal6 383 410 IPR000571 GO:0046872
Lele19g0445 492 SMART c3hfinal6 246 273 IPR000571 GO:0046872
Lele19g0445 492 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Lele19g0445 492 MobiDBLite consensus disorder prediction 459 492 - -
Lele19g0445 492 Coils Coil 49 69 - -
Lele19g0445 492 Gene3D - 189 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0445 Lele-ChrLele19 2551854 2554778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0445 376 482 C2H2 Transcription Factor Family AT3G02830 37.168 1.62e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele19g0445 zf-CCCH 5.3e-08 CL0537