Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0441 ATGAACGGATCAGAGCATCTACTGTCTTCTGTATCTTCTCCCACATCAACACTGTTGCTTATGGCGGCTGCAGCAGTAGTCGAGCCTAGGAAAGCCCCTCGACCGGGTAAGGGCGGGTTCGAAGCTCATGGCCTTTCTGAAGAGGAAGCCCGGGTTCGAGCCATTGCAGAGATCGTCAACTCTATGGTGGACCTCTCGCGGAAAGGCCAAAACGTCGACTTGAATGCGCTCAAATCCGCAGCATGTCGCAAGTATGGACTTTCACGTGCACCCAAGCTAGTGGAGATGATAGCTGCCCTACCGGAGACGGAAAAGGAGGCGCTGCTGCCGAAACTTCGAGCCAAACCTGTCCGAACTGCCTCTGGAATAGCCGTTGTGGCTGTCATGTCCAAGCCACACCGTTGCCCTCACATAGCGACTACTGGTAATATTTGCGTATACTGCCCCGGAGGGCCTGACTCGGATTTTGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACTAGTATGCGAGCGATTCGAGCTAGGTATAACCCATATGTCCAAGCTAGAAGCAGGATAGATCAGCTTAAGCGTTTGGGTCACAGTGTAGATAAGGTTGAGTTCATTTTAATGGGTGGTACTTTCATGTCCCTTCCGGCAGACTATCGTGATTACTTTATAAGGAATCTTCATGATGCTTTGTCTGGACACACCTCTGCAAATGTTGAAGAGGCAGTTGCCTACTCTGAGCATGGTGCAACAAAATGTATTGGCATGACAATAGAAACGAGGCCAGATTATTGTCTTGGTCCTCACTTGCGGCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTACAAAGCACATATGAGGATGTTGCTCGAGACACTAACAGAGGGCATACAGTAGCTGCTGTTGCAGATTGTTTTTGCTTGGCAAAAGATGCTGGTTTTAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGGGATTTGGAAAGCTTTCGGGAATTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGACTTAAAATATACCCTACACTTGTAATACGTGGAACTGGGCTTTACGAGCTCTGGAAAACTGGCAGGTATAGAAACTATCCGCCTGAGCAACTGGTGGACATCGTAGCAAGGATCCTCGCAATGGTGCCCCCTTGGACCCGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACTTCTGGGGTGGAGAAAGGCAATCTAAGGGAGTTAGCTCTGGCTCGGATGGAAGACCTTGGCTTGAAATGTCGTGATGTTCGGACCCGAGAAGCTGGAATCCAGGACATTCACCACCAAATCAAGCCTGAAGAGGTGGAGCTTGTGCGTCGTGATTATACGGCAAATGAAGGCTGGGAAACATTTCTGTCGTATGAAGATACTCGACAGGATATTCTTGTTGGTTTGCTGCGTCTGCGAAAATGTGGTCGGAATACTACTTGTCCTGAACTTATGGGGAAGTGTTCTATCGTTCGTGAACTCCATGTTTATGGAACTGCCGTTCCAGTCCATGGTCGGGATGCTGACAAGCTGCAACACCAGGGTTATGGTACACTATTAATGGAGGAAGCAGAACGAATTGCCCGCAGGGAACATAGATCAACAAAAATAGCTGTAATTTCGGGAGTAGGCACACGCCATTATTACAGGAAACTGGGGTATGAGCTTGAAGGGCCTTACATGGTGAAATATCTACCGTGA 1752 0.4806 MNGSEHLLSSVSSPTSTLLLMAAAAVVEPRKAPRPGKGGFEAHGLSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPETEKEALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLP 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0441 583 SFLD Radical SAM 73 582 IPR007197 GO:0003824|GO:0051536
Lele19g0441 583 PIRSF HAT_Elp3 40 583 IPR034687 -
Lele19g0441 583 ProSiteProfiles Radical SAM core domain profile. 118 408 IPR007197 GO:0003824|GO:0051536
Lele19g0441 583 SUPERFAMILY Radical SAM enzymes 155 394 - -
Lele19g0441 583 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 70 582 IPR034687 -
Lele19g0441 583 Pfam Radical_SAM C-terminal domain 349 428 IPR032432 -
Lele19g0441 583 SFLD ELP3-like 73 582 IPR034687 -
Lele19g0441 583 CDD Radical_SAM 132 379 - -
Lele19g0441 583 Pfam Acetyltransferase (GNAT) family 435 571 IPR000182 GO:0016747
Lele19g0441 583 Gene3D - 434 582 - -
Lele19g0441 583 SMART MiaB 125 387 IPR006638 GO:0003824|GO:0051536
Lele19g0441 583 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 391 578 IPR016181 -
Lele19g0441 583 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 432 583 IPR000182 GO:0016747
Lele19g0441 583 Pfam Radical SAM superfamily 143 337 IPR007197 GO:0003824|GO:0051536
Lele19g0441 583 FunFam Elongator complex protein 3 431 583 - -
Lele19g0441 583 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 38 582 IPR039661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0441 Lele-ChrLele19 2514150 2518440 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele19g0441 Radical_SAM 2.1e-17 CL0036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1118 17 21468471 21474272 Lele19g0441 19 2514150 2518440 hybridization
Lele18g0422 18 2472566 2478392 Lele19g0441 19 2514150 2518440 hybridization