Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0393 ATGGATTGGAATTTGAAGGGTGGCTCCTGGGATTTGAGGGAATTAGCTGGAGGAGGTTTACCCAACGTAGAAACGAGAGTAGATAATTATAACGGATCAAGCAGATTTGGATTTGGATTAGTGAACGGACGTGGAAGCGAATTCTGTGTTGATTTGAAGCTGGGTCAGGTCGGGAATTCTGGGACTGAACCATCAGGACCAAAGTGGAAAGTTGCGAGTGCTGCTGCTGGCGGCGGAGGAGTCTCGAAAACGGCAGCGTCAGGCATTTCAGGATCATCGAAGAGAGCTCGAGCAATCAACAACGGGACCCAAACGGCGTCGTGCCTGGTGGATGGGTGCAGTTCAGATCTGAGTAACTGTAGGGAGTATCACCGGCGTCACAAGGTGTGCGAACTCCATTCTAAGACCCCTGTGGTCACCATTAGCGGCCTCAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAAGAATTTGATGAAGGGAAGAGAAGCTGCAGGAAGCGATTAGATGGGCACAACCGACGGAGGAGAAAGCCCCAACCAGTTCCTCTCACTCGTTCTGCTACTTTATTCTCGAATTACCACCAAGGGAGGCAGTTACTACCGTTATCATCGGACTCAAATCTCTATCCTTCAAGTGCTGTGGTGAACCCTGGTTGGGACTGGGAATGGGATGGTAGGACGGTGGTTCACCATCATCATAATAATAATAAGCCGCAGCTATTTCTTGGGTCTTCTGAAAACGCCAGAATTAAGCAGGAAACGACGACATATCACGAAGCTGATTCTGCGTGCCAGACGCTTCTGAGGGCGACGGCGGCCAGGACTGGGTCTTTCTCATTGGCGGAGGAGTCTCCTCCTCCGCCTAGTGCTCGCTCTCTTCTGTCATCACCGCCGGCACCCATGTACCTGTCGCAGCCTCTAGGCCCCACCACCCTCCATGATCATCACTCCTTACAAGAGGCCGTGGACACCACACTTCTGGTGAGCAACGGGACTCAGCCTTCGATGTATAACTTATTAGGGTCTGATGCATCGTCACAGGGGATCCATACTTCTCAGTCACTTCCATTTTGGGAATAA 1092 0.5128 MDWNLKGGSWDLRELAGGGLPNVETRVDNYNGSSRFGFGLVNGRGSEFCVDLKLGQVGNSGTEPSGPKWKVASAAAGGGGVSKTAASGISGSSKRARAINNGTQTASCLVDGCSSDLSNCREYHRRHKVCELHSKTPVVTISGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPVPLTRSATLFSNYHQGRQLLPLSSDSNLYPSSAVVNPGWDWEWDGRTVVHHHHNNNKPQLFLGSSENARIKQETTTYHEADSACQTLLRATAARTGSFSLAEESPPPPSARSLLSSPPAPMYLSQPLGPTTLHDHHSLQEAVDTTLLVSNGTQPSMYNLLGSDASSQGIHTSQSLPFWE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0393 363 SUPERFAMILY SBT domain 107 184 IPR036893 GO:0003677|GO:0005634
Lele19g0393 363 Gene3D - 99 169 IPR036893 GO:0003677|GO:0005634
Lele19g0393 363 ProSiteProfiles Zinc finger SBP-type profile. 105 182 IPR004333 GO:0003677
Lele19g0393 363 FunFam Squamosa promoter-binding-like protein 14 99 169 - -
Lele19g0393 363 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 67 337 IPR044817 GO:0003677
Lele19g0393 363 Pfam SBP domain 108 181 IPR004333 GO:0003677
Lele19g0393 363 MobiDBLite consensus disorder prediction 281 317 - -
Lele19g0393 363 MobiDBLite consensus disorder prediction 343 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0393 Lele-ChrLele19 2295543 2297054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0393 1 223 SBP-box Gene Family AT5G50670 50.000 7.80e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele19g0393 SBP 6.9e-31 No_clan