Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0370 ATGCCTTTTGAAATAATTAACCAGAGGGGCATATCTGCCTCGTCCCACCTTTTTGATGACAATTCCTTTTTTCCTGAGAGGAGTGTTGGATTGCAGAAGCCAAAATCCTTTCATGATCATTATTTAAAAGGGAAAATGGAAGCATCACCCCGCGGCATTTCAAGTACATCATCATCTCTAGAAATGAATGCTAACTATGGCTTGCCAATGTCACAAACAAGTTTGTCAGAAGAAGTTACAGAAAAGCTGCATGTTGGGGGAGGAGGCATCATTGATGTGTTGAAGTCTACCAAGGAATCATTGAATCAGCACCCCATATCATGGTCTAATGTGCATGTGCATATGCAACCAGAATCTACATCTTATAACTTAACTGGAAAAAAGATCCTCACTGGTACTGCTTCTCATGAGAGCAGCCTATTCTCTAGCTCACTGTCTGAGATATTTAGCCAAAAATTGAGGTTATCTCGGAATGATATGTTGTCTCGTCAGCCTGTAACCATTGGTTCGTTTCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATTGAGGCAGACACTATCGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTACTAATGAGTTAGGATACGCTGCCAATGCCAGAACAAGTGATGACTTTGAGGAGTTTGATTTATTTAGCAGTGGCGGAGGCATGGAACTTGAAGGAGATGAACATCTAAGTTTGGGAAAGAAAATCGGTAGTCGGGATGTGGATTCTGGTTATTTTGGAGGTTTTAAAGGAAAACTTCCTTTTGGTGAACAACCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGATGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGACATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTACTATGACCTAAGGGCAGCACAAAATGCAATGCAAGCCCTTCAGAATAGGTCATTGAGGTCTAGGAAACTGGATATTCATTATTCAATTCCAAAGGGCAATGCTCCTGAGAGGGATATAAGCCATGGCACGCTAGTGCTATCTGGTCTTGATTCTTCTGTTGCAAATGATGAGCTTCAAAAGATTTTTGGATTTTATGGAGAAATAAAAGAAGTCTATGAATCTCCCGAAGTAAATTGTAAAAAAATTATTGAATTTTATGACGTGCGAGCTGCAGAAGCTGCTCTTCGTGCATTAAACAGAAGTGACATTGCTGGTAAGCCGATCAAAATTGAACCTGGCCATCCTCGGGGAACAACATGTCTGACGCATGAGTCTAACAGTGGCCAAGATGAACCTGATTTTGGTCAAAGTCTCTGTAACTTATCACTAAGACAAAAGGCAACGATGTCTTCTGGAGTAATTACTTCTGGCTGCTTAGAAAATGGACCTAATTCAGGATTTCGCTCTGCAATCCAGCAACCTATTAATGCATTGATTGATAATGCGTTCTCTCCTGTGAATTCTAGCATCCACAAATCAGTGAGAGGGCCAACTTCTGGAAAAGTGCCTGGTGTTGGCGATTCCATTAACTTCCTCGATGCAATGAAATTTGCTTCTGTTCCAAGATTCCATCCTCATTCCCTCCCTGATTATCATGATAGTTTTGCTAATGGTAGTGCTTACAACCTTTCAAGCATTGTTGGCAATGTGGCTGGCAATATTGGTACTGCAGTGACTGACAGCTCAGATAGCAGGCACAATCTGGGAATAGGTTCAACTGGGAATCTGATGGAATTTACTGGAGCAGGAAATGGGAACCATGAACGTCATGGACTTTATCATGTGTGGAACAGCTCCAATTTGCATCAGGAACCTTCACCAAATCCTCTGCTTTGGCAGAAAACACCATCTTTTGTTAACGGTGCTTGTGCTCCTGGCCTTCCGCAAATGCCTGGCTTTCCTAGAACACAGCCTCACATGCTGAGAGCATCACATATGGACCATCATGTTGGGTCAGCTCCTGTTAATGCCTCACCCTGGGACAGGCAGCACTCTTATTTGGGAGTATCTCCTGAAACTTCTGGTTTTCGTATGGGTTCTCTGGGAAGTTCTGGTTTACCTGGTAGCTGGCAATTGCATCCTCCAGATTTTTCTTCTCACAACATGTTTCCTCATATCGGTGGAAATGGTGCAGAATTGACCCCAACTGCTGGGCAAAACTCTCCTAGTCAGTTGTCACATGTTTTCCCTGGGGGACATCTCATGACTTCTATGTCCAAACTTGATTCCAATGAACGAATGAGGAACCTATATCCCTTCCGGAAAAGTGAAGCTAACGCTAATAATGCTGATAAAAAGCAATATGAACTTGATCTGGGCAGCATAATGCGTGGGGAAGACAGCCGAACAACTCTCATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGTCGGGGAACTTATGATTTTCTATATTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTTATTAATATGATAGATCCTGCTCAGATCATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAATTTAATAGTGAAAAGGTGGCCTCACTTGCATATGCCCGAATTCAGGGTAAAGCTGCACTTATTGCTCACTTCCAGAATTCAAGCCTGATGAATGAAGACAAGCGTTGCCGTCCTATTCTGTTCCACACAGATGGCCCGAATGCTGGTGATCCGGAGCCCTTCCCCATGAGTACTAACATTAGAATGAGGCCCGGAAAATCTCGCGGTAGTAGTAATAACGAGGAGAATCGCAGCCAGGGTTGTCCTTCAACTTTGGCAGGCGGAGAGGGATCTACTACTAATGTAATAGATTCTTCATTGAGCTCTTAA 2904 0.4218 MPFEIINQRGISASSHLFDDNSFFPERSVGLQKPKSFHDHYLKGKMEASPRGISSTSSSLEMNANYGLPMSQTSLSEEVTEKLHVGGGGIIDVLKSTKESLNQHPISWSNVHVHMQPESTSYNLTGKKILTGTASHESSLFSSSLSEIFSQKLRLSRNDMLSRQPVTIGSFPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTNELGYAANARTSDDFEEFDLFSSGGGMELEGDEHLSLGKKIGSRDVDSGYFGGFKGKLPFGEQPSRTLFVRNINSNVDDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPERDISHGTLVLSGLDSSVANDELQKIFGFYGEIKEVYESPEVNCKKIIEFYDVRAAEAALRALNRSDIAGKPIKIEPGHPRGTTCLTHESNSGQDEPDFGQSLCNLSLRQKATMSSGVITSGCLENGPNSGFRSAIQQPINALIDNAFSPVNSSIHKSVRGPTSGKVPGVGDSINFLDAMKFASVPRFHPHSLPDYHDSFANGSAYNLSSIVGNVAGNIGTAVTDSSDSRHNLGIGSTGNLMEFTGAGNGNHERHGLYHVWNSSNLHQEPSPNPLLWQKTPSFVNGACAPGLPQMPGFPRTQPHMLRASHMDHHVGSAPVNASPWDRQHSYLGVSPETSGFRMGSLGSSGLPGSWQLHPPDFSSHNMFPHIGGNGAELTPTAGQNSPSQLSHVFPGGHLMTSMSKLDSNERMRNLYPFRKSEANANNADKKQYELDLGSIMRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMSTNIRMRPGKSRGSSNNEENRSQGCPSTLAGGEGSTTNVIDSSLSS 967
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0370 967 CDD RRM1_MEI2_like 268 343 IPR034453 -
Lele19g0370 967 SUPERFAMILY RNA-binding domain, RBD 266 428 IPR035979 GO:0003676
Lele19g0370 967 Pfam RNA recognition motif 2 794 890 IPR007201 -
Lele19g0370 967 Gene3D - 350 445 IPR012677 -
Lele19g0370 967 FunFam Protein MEI2-like 1 353 447 - -
Lele19g0370 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Lele19g0370 967 PANTHER RNA RECOGNITION MOTIF-CONTAINING 62 941 - -
Lele19g0370 967 SUPERFAMILY RNA-binding domain, RBD 796 881 IPR035979 GO:0003676
Lele19g0370 967 MobiDBLite consensus disorder prediction 928 967 - -
Lele19g0370 967 MobiDBLite consensus disorder prediction 908 967 - -
Lele19g0370 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Lele19g0370 967 FunFam MEI2-like protein 5 isoform 2 258 352 - -
Lele19g0370 967 CDD RRM3_MEI2_like 797 882 IPR034454 -
Lele19g0370 967 Gene3D - 263 349 IPR012677 -
Lele19g0370 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Lele19g0370 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Lele19g0370 967 SMART rrm1_1 355 423 IPR000504 GO:0003723
Lele19g0370 967 SMART rrm1_1 796 872 IPR000504 GO:0003723
Lele19g0370 967 SMART rrm1_1 270 338 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele19g0370 Lele-ChrLele19 2180997 2187019 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0370 264 423 Eukaryotic Initiation Factors Gene Family AT3G16380 25.946 2.27e-09 59.3