Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0366 ATGCAGCATGGCTTGCGGCACGGAGATTACACTCGTTATAGGAGGTATTGCACAGCTCGTTTGAGGAGGTTATATAAATCTTTGAAGTTTACCCATGGTCGTGGCAAGTACTCAAAAAGAACCGTTACTGAATCCGCTGTTACTGAAGTAAGGTTTCTTCATATAGTTCTCTATTCAGCAGAGAGAGCTTGGAGTCATGCAATGGAGAAAAGACAACTTCCTGAAGGTCCAAATTCACGTCAACGAATCTATTTGATTGGCAGGTTGCGGAAAGCAGTAAAGTGGGCAGCTTTGTTTTCACAACTTTGCACAGTCAAGGCAGATTCTAGAACATCTTTGGAAGCTGAGGCTTATGCATCCTATATGAAGGGGAACTTATTGTTTGAACAAGATCAGAATTGGGATGTGGCTTTGATGCACTTCAAAAGTGCAAGGGCTGTGTATGAAGAATTAGGGAAATACGGAGATTTGGATAATCAAATTTTGTGCCGTGAACGAGTTGAGGAATTAGAACCTAGTATCAGATACTGTCTTCACAAAATCGGCCAGTCAAATCTGCAAGCTTCTGAGCTTCTACATATTGGTGATATGGAAGGTCCTGCCCTAGACCTCTTCAAAGCTAAATTAGAGGCTGTTATGGCAGAGGCAAGATCTCAACAAGCTGCTTCCATGACAGAGTTTCATTGGCTTGGCCATAGATTTCCAATATCAAATGCGAAAACAAGGGTTGCCATTTTAAAAGCTCAGGAGCTGGAGAAAGATTTACATGGTCCCTCTGCTGATTCAATCCCAGCAGATAAAAGGCTTGCTACTTTTGACAAAATATTTTCAGCATATCATGAAGCCAGAGGCTATATTCGGGCTGACCTGGCCACAGCTGGAAGTGCCGAAAGTGTGAAAGATGAGTTGTATGGTCTTGATAAGGCTGTCAGTGCCGTCTTAGGGGAAAGAACTATTGAGCGCAACCTCTTGTTGGTTAAGGTTGCAAAAAGCAAACTTGCTAGGCGTCGTGATGAAAAAAATGAGAAAGTCACCAAACCTGAAGAGCTTGTTCGCTTATATGATCTCTTGCTGCAGAATACTGCTGATCTTTCTGATTTAGTCAGTTCTGGAAGGGATAAAAAACCAGAAGAAGTGAGCTTTGCAGAAGAGTGTGCAAGCAAAACGTTGGCTTTTCGAGCAGAAAGATGTTTTTATGTGTCAAAGCCATACAGCATGGCTGGAAAAAGGGTTGAAGCATATGCTTTGTATTGTCGTGCTCGTGATTTGGCAGATAATGCCCTAGGAAAAATTAAAATGTTAAATGGCAACAATCAGATTATGGTGAAGGATTTGGAGGGCTTATGCAATGAGTGCAGATCTAACAGTTGCGTAGAGCATGCCATGGGGATTATGGAGGAGAAGAGAGCTCCAGATAATCTATCTAGAAGGATATCCAACATCTCATTGACTGGAGATAATCAGTGTAAACATAATTCAGTTGCCACAACTGCTTACCTTTCACTCCCCGAAATTCAGGAGATATGCACTGTTTGCATGAACCTTTATCTATATATTCTGATGACATGTCAATGCCTGTGTCAGCTGGAGAAGTTCCTCACAGAGAAACTTGATGTCTTTGAGTCGGCTGTCGGTGATCCTAACGTGAAAAGTGCTCCCCGCATTGTTGCTTTCCCACCAGCTTTCACTGCCATTCCGCGCAATCCTATTGTGCTGGACCTGGCATTTGATATAATAGACTTCCCAGCCATCGATAATAGGATGAAGAAGGATAGAAAAGAATACAATATTGGATTTAATCTGCAAGGTTGGGTTGTTCATGGCATATCTTCAAATCTTAAAAATGCTGTGTCCAGGAACAATTGCATTAAGGAGAAGATCATGCTGCAATGCTTGGAAGAAGGTGTAGATTCATTACGGATGAGATGCCAAAAGTTCTACAAAGGATGTCGCAAGTACACGGAAGGTCTTGGAGAGGGATATGATGGGGACATTGCTTTTGCGAGCGCTCTTGAAACTTTCGGGGGAGGGCATGGTGATCCTCTTTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTCACTATTGCTTTGAGAGAAATTGGTACCTACAAAGAAGTTCTGCGGTCGCAGGAGGCTCGAAAGCGGTTTGACAAAGCTTCCCTTGCATATGATCAGGCACGCGATAAGTTTCTGTCATTGAGAAAGAGCACTAGGATGGATATTTCTACTGCCATCGAACAGGAATGGCACAGTGCAAGAGATTCGTTTGAGGAAGCTCGTTGCAATCTGGTTAGTGCTCTAAATATTGTTGAGGCCAAGAAGAGATTTGAATTTTTAGAGGCTGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGTCTTGGCTTATTCACAGCAGTCAAGAGAAAGTTACAACACGGATCAGATCTCTCTCAATGAAAAAATGCAAGAGTACAAAAGACAAATTCACCAAGAAAGTAGATTGTCTTTAAATGGTCCCCATGGTTCTCCTGGAGAATGTGTAAAGCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGACAAGGATTTCTTTCAAAACGCTCCTCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGACAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTTGGCACATAGTGGCAATCCACCATCTGTCCAGAGAAATAATGCCAATGAAAATGGTTCTGGAATTCTGAGCCGTTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAGCGATCTGTGGCACGTCATGCAGTGAACCTGCTTACATCCACTATTAAGGTTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGACTGAAAAAATGACCGGAGTAATTTCTTCCTTGTTGAGTGTTCAGTCAATTGAAATGCCTCTCACAGCTGACTCTGCAAGAGGTGGATGTTCCTCTTCAAGCAATATTGATATGTTGGAAAACTTTCAAGACGATATTCAACCAATGAGTAAGGAGTGTGCATCCAAGAACATCACTTCTAATAATCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTACTAGAAGTGAAAACCCAATTGATGTTCTTAGAAGGGTAAGTGGAAATGACAGATGTGCAGATTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGTATTCTCATATGCATCGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTCTGGGACCCTTCTGTCCTAACCATGTTTCAGTCCCTGGGCAATCATTTTGCCAACTCAGTTTGGGAAGAGAAGTTGCATTCAGCAAGTAAAATGCAAGCTGCTGATATGACTGTTGAATGCTTTCCCTTAATGCAGTATTCGGAGAAAATCTTTGTCGATCAGATAAAGAATAACAACCATCTCCTTTCAGTGGCACAACAGTTGTGGGAAAGCGTCTGTGCCAATGACAAGAAAGCAGCATACCGGTATATTGTGAAGTCTGATTTGGACGTCAATGCTGTCTGTGGGCAAGAATATTTTGATGATGCTTTTGACATGCCTTCTTCAAGCAATTCAAAAACTTCAGCTAAGAGTGAAAATCAGCCAATAGAGGACATACTTGACGGTTCAACCGTGCTTCACCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTACTCTTACAATATGGCGCAGACATAAATGCTTCTGATTCAAGAGGTCGCACACCACTGCATTACTGTATCATCAGAGGGAAGAATGCAACTGCAAAATTGCTTCTTATGAGGGGGGCCAACCCACATGCTGCAGATGATGAAGGCAATACTCCTCTTAAACTTGCATCAGAATCCGTTCTTTTAGCAATGATGTTCTCGCCCTCATTACAAGAAGATGACAACATGCCTGCAGAGCATATAAATATTTACAAATAG 4107 0.4198 MQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYSKRTVTESAVTEVRFLHIVLYSAERAWSHAMEKRQLPEGPNSRQRIYLIGRLRKAVKWAALFSQLCTVKADSRTSLEAEAYASYMKGNLLFEQDQNWDVALMHFKSARAVYEELGKYGDLDNQILCRERVEELEPSIRYCLHKIGQSNLQASELLHIGDMEGPALDLFKAKLEAVMAEARSQQAASMTEFHWLGHRFPISNAKTRVAILKAQELEKDLHGPSADSIPADKRLATFDKIFSAYHEARGYIRADLATAGSAESVKDELYGLDKAVSAVLGERTIERNLLLVKVAKSKLARRRDEKNEKVTKPEELVRLYDLLLQNTADLSDLVSSGRDKKPEEVSFAEECASKTLAFRAERCFYVSKPYSMAGKRVEAYALYCRARDLADNALGKIKMLNGNNQIMVKDLEGLCNECRSNSCVEHAMGIMEEKRAPDNLSRRISNISLTGDNQCKHNSVATTAYLSLPEIQEICTVCMNLYLYILMTCQCLCQLEKFLTEKLDVFESAVGDPNVKSAPRIVAFPPAFTAIPRNPIVLDLAFDIIDFPAIDNRMKKDRKEYNIGFNLQGWVVHGISSNLKNAVSRNNCIKEKIMLQCLEEGVDSLRMRCQKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHGDPLFVALGGPVMTKFTIALREIGTYKEVLRSQEARKRFDKASLAYDQARDKFLSLRKSTRMDISTAIEQEWHSARDSFEEARCNLVSALNIVEAKKRFEFLEAVSGIMDAHLRYFQQVLAYSQQSRESYNTDQISLNEKMQEYKRQIHQESRLSLNGPHGSPGECVKPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNLAHSGNPPSVQRNNANENGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQSDLRFCFRIISPVKNYTLQAENAVDQMDWTEKMTGVISSLLSVQSIEMPLTADSARGGCSSSSNIDMLENFQDDIQPMSKECASKNITSNNHLREYKSFQLHKQSTRSENPIDVLRRVSGNDRCADCGKPEPEWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEEKLHSASKMQAADMTVECFPLMQYSEKIFVDQIKNNNHLLSVAQQLWESVCANDKKAAYRYIVKSDLDVNAVCGQEYFDDAFDMPSSSNSKTSAKSENQPIEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYCIIRGKNATAKLLLMRGANPHAADDEGNTPLKLASESVLLAMMFSPSLQEDDNMPAEHINIYK 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0366 1368 Coils Coil 710 730 - -
Lele19g0366 1368 SMART arf_gap_3 1076 1196 IPR001164 GO:0005096
Lele19g0366 1368 Pfam BAR domain of APPL family 708 826 - -
Lele19g0366 1368 Gene3D Arfaptin homology (AH) domain/BAR domain 711 830 IPR027267 -
Lele19g0366 1368 Gene3D Arfaptin homology (AH) domain/BAR domain 626 710 IPR027267 -
Lele19g0366 1368 CDD SRP68-RBD 1 179 IPR034652 GO:0003723
Lele19g0366 1368 SMART ANK_2a 1265 1294 IPR002110 GO:0005515
Lele19g0366 1368 SMART ANK_2a 1298 1327 IPR002110 GO:0005515
Lele19g0366 1368 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 1058 1203 - -
Lele19g0366 1368 SMART PH_update 870 1007 IPR001849 -
Lele19g0366 1368 ProSiteProfiles Ankyrin repeat region circular profile. 1265 1296 - -
Lele19g0366 1368 Pfam Ankyrin repeats (3 copies) 1270 1341 IPR002110 GO:0005515
Lele19g0366 1368 ProSiteProfiles Ankyrin repeat profile. 1298 1330 IPR002110 GO:0005515
Lele19g0366 1368 SUPERFAMILY Ankyrin repeat 1211 1341 IPR036770 -
Lele19g0366 1368 ProSiteProfiles Ankyrin repeat profile. 1265 1297 IPR002110 GO:0005515
Lele19g0366 1368 Gene3D - 862 1015 IPR011993 -
Lele19g0366 1368 CDD PH_ACAP 872 1009 - -
Lele19g0366 1368 Pfam PH domain 871 1001 IPR001849 -
Lele19g0366 1368 CDD BAR_SFC_plant 629 798 IPR035670 -
Lele19g0366 1368 Pfam RNA-binding signal recognition particle 68 5 579 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Lele19g0366 1368 SUPERFAMILY PH domain-like 870 1023 - -
Lele19g0366 1368 PANTHER CENTAURIN/ARF 622 1344 IPR045258 GO:0005096
Lele19g0366 1368 SUPERFAMILY ArfGap/RecO-like zinc finger 1076 1189 IPR037278 -
Lele19g0366 1368 Gene3D - 1243 1354 IPR036770 -
Lele19g0366 1368 ProSiteProfiles PH domain profile. 869 1005 IPR001849 -
Lele19g0366 1368 SUPERFAMILY BAR/IMD domain-like 629 892 IPR027267 -
Lele19g0366 1368 ProSiteProfiles Ankyrin repeat region circular profile. 1298 1330 - -
Lele19g0366 1368 PRINTS HIV Rev interacting protein signature 1107 1124 IPR001164 GO:0005096
Lele19g0366 1368 PRINTS HIV Rev interacting protein signature 1130 1151 IPR001164 GO:0005096
Lele19g0366 1368 PRINTS HIV Rev interacting protein signature 1088 1107 IPR001164 GO:0005096
Lele19g0366 1368 SMART 5bar 612 810 IPR004148 GO:0005515|GO:0005737
Lele19g0366 1368 Gene3D - 1 183 IPR038253 GO:0003723
Lele19g0366 1368 CDD ArfGap 1079 1178 - -
Lele19g0366 1368 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1076 1196 IPR001164 GO:0005096
Lele19g0366 1368 Gene3D Arf GTPase activating protein 1064 1196 IPR038508 -
Lele19g0366 1368 Coils Coil 805 825 - -
Lele19g0366 1368 FunFam Signal recognition particle subunit SRP68 1 184 - -
Lele19g0366 1368 Pfam Putative GTPase activating protein for Arf 1079 1190 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0366 Lele-ChrLele19 2138063 2152557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0366 1062 1190 C2H2 Transcription Factor Family AT3G07940 40.441 9.72e-20 89.4