Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0364 ATGGGATCATCAGAGGTATCGATCAAGGGAATTCGCATGGACGGGACTGGGGGAAGCCCCTCCTCTGTTTACAACAACCATAACGATGCTTGGAATGCTGCAGAGTGTCAGAATGCTCACCCATCATCAACTGTGAGAGACCCTGAAGCAGCGCTGTACGAGGAGCTATGGCATGCTTGTGCTGGTCCTCTCGTTACAGTGCCCCGTGAAGGGGAACGGGTCTTCTATTTTCCTCAGGGACATATTGAGCAAATGGAGGCGTCCACAAATCAGGTGGCGGACCAGCAGATACCTGTGTACGATCTCCCATCGAAAATCCTTTGTCGAGTGATCAACGTGCTGTTGAAGGCTGAGCCGGACACCGATGAGGTATTTGCCCAGGTGACCTTGCTTCCGGAGCCAAATCAAGATGAAAACGCCGTGGAGAAAGAGGAGCCGCCTCCTCCACCTCCACGATTTCACGTGCATTCGTTCTGTAAAACTCTGACGGCCTCTGATACGAGTACTCATGGTGGATTTTCAGTACTGAGACGTCATGCCGATGAATGCCTTCCTCCGCTGGATATGTCGAAGCAGCCACCTAATCAGGAGTTGGTGGCGAAGGATCTACACGGTAACGAGTGGAGATTCAGGCATATCTTTAGAGGTCAACCACGTAGACATCTACTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCTAAGAGGCTTGTTGCTGGTGATGCATTTATATTTTTGAGGGGTGAGAATGGGGAACTTCTTGTTGGTGTAAGGCGTGCAATGAGACATCAGGGTAATGTTCCGTCCTCAGTGATCTCTTGTCATAGCATGCATCTTGGTGTCCTTGCAACTGCCTGGCATGCGGTTTCGACTGGGACCATGTTCACCGTGTATTACAAGCCCAGGACCAGTCCTGCTGAATTTATTGTTCCATATGAACAGTATATGGAGTCTCTACAAAATAACTATACAATAGGAATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGTCTCCAGAGCAAAGGTTTACTGGTACTGTTATTGGACTTGAAGATGCTGATACACAAAGATGGCCGAAATCCAAATGGAGATGCCTCAAGGTGCGATGGGATGAAACATCTAGCATTCCTCGTCCTGAGAGAGTTTCTCCTTGGAAAATAGAACCTGCCCATGCTCCTCCAGCTCTAAATCCTCTTACAATGGTCAGGCCTAAAAGGCCCCGGTGTAATGCTGTTCCATCATCACCTGATTCCTCTGTTCTCACTCGTGAAGTGTCATCTAAGGTAAGTATAGACCCTTTGCCAGCAAGTGGATTCCCAAGGGTATTGCAAGGTCAAGAATTGTCGACCTTGAGAGGCACTTTGGCGGAAAGCTATGAATCTGATACTGCTGAAAAGCCTGATGAAAGAAATGATGCAGTGTCTACTTCAAGTACGTTTGCTCCAGAGAGCTGGACAGCAATGGGGAGGCATGAGCCTACATATTCAGATTTGCTTTCGGGCTTTGGGACATGTGGAGATCGAACCCATTTATCCTTGGTACATCAAACTAGCCCTGTGGCTAGTCCTGGAAGAAAACATGTGTTAGGTCATGAAGTCAAGTTTAATATGGTAGCCTGCCCAAGGTCTGTAAAGCCTTCTAATCTGTCATTAAACCTCTCGGACCCTAATATGAAAGGTTCTGCACAAGACAGTGATGTAGCTTACCATGCTAGGCGGAATGTGAGGTATGGTGCATTTGGTGATTACCCTGTTCTTCATGGTCACAAAGAAGTGCATAGGCATGGAAGCCTATTGATGCCACCGCCTCCACCCCCAAGTCAGCATGATAGTCCTGGATCAAGGGACCCGATGCAAAAACCAATACCAGCAAGATCATACGAGACTGTTAAAGCTAAAGAAGGGGATTGTAAGCTATTTGGTATCTCACTTATCAGTAGCCCAAGTACACCAGAGCCTTCCACATCAAAATTAAATGTGGAGTGTAAGCCAGCTGGTCACAAGCATCTTACATCTCACCGGCCTTATAGTAATGAAAATGATTTGAAATCAGAGCAATCAAGCGGATCGAAGCTGCCAGATGCTGTAGTTGCTACTGATGACCATGAAAAGCCATCACAAACATTTCTGCCACATATGAAAGGTGTTCAAGCCAAACCATGCAGTGATTCTGTTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTTGGAAGATCAGTTGACCTTACGAAGTTCAGCAACTATGATGAATTAGTAGCTGAATTAGATGAATTGTTCGAGTTTGAAGGGGAATTAAGGTCGTGGAAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGGGATGACCCATGGCAGTTAGGATCTCTTTCTAATTTTAGTCATTGAGTCTGTCGGTTAGTGAAGGCGTGGATGCTAAAGAAGTCTAATTTCAGCTTCATGATGATTAAATTTGATACCATAGCTTCCAGCTCAGCTCTAGAGAAGCAGGAGATTCTACGAGGCCTTCCAGTTGGGAACTACGACGAAGACGAACTGTGA 2562 0.4633 MGSSEVSIKGIRMDGTGGSPSSVYNNHNDAWNAAECQNAHPSSTVRDPEAALYEELWHACAGPLVTVPREGERVFYFPQGHIEQMEASTNQVADQQIPVYDLPSKILCRVINVLLKAEPDTDEVFAQVTLLPEPNQDENAVEKEEPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPNQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELLVGVRRAMRHQGNVPSSVISCHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPAEFIVPYEQYMESLQNNYTIGMRFKMRFEGEESPEQRFTGTVIGLEDADTQRWPKSKWRCLKVRWDETSSIPRPERVSPWKIEPAHAPPALNPLTMVRPKRPRCNAVPSSPDSSVLTREVSSKVSIDPLPASGFPRVLQGQELSTLRGTLAESYESDTAEKPDERNDAVSTSSTFAPESWTAMGRHEPTYSDLLSGFGTCGDRTHLSLVHQTSPVASPGRKHVLGHEVKFNMVACPRSVKPSNLSLNLSDPNMKGSAQDSDVAYHARRNVRYGAFGDYPVLHGHKEVHRHGSLLMPPPPPPSQHDSPGSRDPMQKPIPARSYETVKAKEGDCKLFGISLISSPSTPEPSTSKLNVECKPAGHKHLTSHRPYSNENDLKSEQSSGSKLPDAVVATDDHEKPSQTFLPHMKGVQAKPCSDSVRSCTKVHKKGIALGRSVDLTKFSNYDELVAELDELFEFEGELRSWKKDWLIVYTDNEGDMMLVGDDPWQLGSLSNFSHXVCRLVKAWMLKKSNFSFMMIKFDTIASSSALEKQEILRGLPVGNYDEDEL 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0364 853 ProSiteProfiles PB1 domain profile. 725 805 IPR000270 GO:0005515
Lele19g0364 853 Gene3D - 321 392 - -
Lele19g0364 853 SUPERFAMILY CAD & PB1 domains 728 794 - -
Lele19g0364 853 MobiDBLite consensus disorder prediction 133 154 - -
Lele19g0364 853 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 799 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele19g0364 853 FunFam Auxin response factor 156 260 - -
Lele19g0364 853 FunFam Auxin response factor 321 393 - -
Lele19g0364 853 Gene3D - 720 816 - -
Lele19g0364 853 MobiDBLite consensus disorder prediction 395 418 - -
Lele19g0364 853 MobiDBLite consensus disorder prediction 453 482 - -
Lele19g0364 853 CDD B3_DNA 156 258 IPR003340 GO:0003677
Lele19g0364 853 MobiDBLite consensus disorder prediction 643 692 - -
Lele19g0364 853 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele19g0364 853 SUPERFAMILY DNA-binding pseudobarrel domain 154 287 IPR015300 -
Lele19g0364 853 MobiDBLite consensus disorder prediction 661 679 - -
Lele19g0364 853 Gene3D - 155 260 IPR015300 -
Lele19g0364 853 MobiDBLite consensus disorder prediction 590 627 - -
Lele19g0364 853 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Lele19g0364 853 SMART B3_2 158 260 IPR003340 GO:0003677
Lele19g0364 853 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Lele19g0364 853 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0364 Lele-ChrLele19 2123592 2128113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0364 1 793 B3 DNA Binding Superfamily AT5G62000 61.922 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele19g0364 AUX_IAA 1.4e-07 CL0072