Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0309 ATGGTAAAGGAAGAAGTCAGCAATGACAGTTCCTCAAATGTTGAGACTGAGGATTCAGAATCTCATTCTCAACATAGTCCTGAGAAGGAGACAGGCTGGACGAGGATGAATTGTCGTGTGTGCCAATGTGCTGAATCCGATAATAGGGGAGATGCTGCTCTAGAATTTTTGGGCATCGCTCCAGTTTCAGAACCTGACGGAAGTAATGTTGAAGACAGGTCAGAATGCGAGGATGTTTCCAAAAATGCATCTCTTAAAAGGAATGTTGGAAGTAAATCTGGGGTTTTGGAGTTTGTAAGCCCTGATGGAGAGGTTTACGTTTGCAAAACTGATTTAGAAATGGGTCTTTCTCATCGAGACACTCTTATTGAACTTGGCTGTTGTTGTAAAAATGACCTTGCTGCAGTACATTATGCTTGTGCACTTAAATGGTTTGTCAATCACGGTTCTACCGTCTGTGAAATATGTGGCAATGTGGCAAAAAATATCAGAATTGCTGACTTCAATAAGGTTGTTGCTTCTTTGAAAGAGTATGAAGCATTGAGGGAAAGAACGGCCATTGGGCAACCCAGTCCTGCTCAAGTTCATGCAAATACTGGTGTAGATCCCGATGCTGTGGCTGCTATCAGGAGGCAACGGCTAAGCGAAATTGCACTATGGTTTTGTACCCGTAATAACAGCAACAACAACAATGTGGACACGGTCTCATTAGTTGTTTCTGAACAACCTTTAAATAGTGTTACCGAGGATGCTGCACCTGTTCAAAATCGTTCAACTAAGTGGGCAGTGGAAATTACTGGGATCCTGCTTGCTACTGGGCTACTTACTGTCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAAAGAAAACTGCAAGAAGTGGTCTTCATATCTTACTTGGAGGCATTTGCGCTTTAACGGTTGTGGTTTTCTTCCGATTTTTCGTGCTCACCAGAATCAAGTACGGACCTGCACGTTACTGGGCAATTTTGTTCATTTTCTGGTTTCTTGTGTTCGGAATATGGGCTTCACGGACACACAGTGCTCATACAACGTGA 1059 0.4334 MVKEEVSNDSSSNVETEDSESHSQHSPEKETGWTRMNCRVCQCAESDNRGDAALEFLGIAPVSEPDGSNVEDRSECEDVSKNASLKRNVGSKSGVLEFVSPDGEVYVCKTDLEMGLSHRDTLIELGCCCKNDLAAVHYACALKWFVNHGSTVCEICGNVAKNIRIADFNKVVASLKEYEALRERTAIGQPSPAQVHANTGVDPDAVAAIRRQRLSEIALWFCTRNNSNNNNVDTVSLVVSEQPLNSVTEDAAPVQNRSTKWAVEITGILLATGLLTVTLAWLIAPRVGKKTARSGLHILLGGICALTVVVFFRFFVLTRIKYGPARYWAILFIFWFLVFGIWASRTHSAHTT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0309 352 SUPERFAMILY RING/U-box 122 159 - -
Lele19g0309 352 SMART ringv_2 107 157 IPR011016 GO:0008270
Lele19g0309 352 PANTHER ZINC FINGER, RING-CH-TYPE 8 319 - -
Lele19g0309 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 160 IPR013083 -
Lele19g0309 352 ProSiteProfiles Zinc finger RING-CH-type profile. 100 163 IPR011016 GO:0008270
Lele19g0309 352 MobiDBLite consensus disorder prediction 15 29 - -
Lele19g0309 352 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0309 Lele-ChrLele19 1839320 1841457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0309 6 342 C3H Transcription Factor Family AT5G08750 64.286 9.38e-148 419