Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0293 ATGGCTCCAGGGAAATATTCCAGATTAGACAATAAAAGATCATCATCAAGTTATGGGTCAACAGTAACTGTTGTTATGTTTGTGGGCCTATGCTTAGTTGGAGTTTGGATGATGACATCATCCTCTGTAGTTCCTGTCCAAAATGCGGATCAGGAGAATAAGATTGAAGTAAAGGAAAACACTGAGGTTGAAAAACAGGTGAATGACATCAACAAGGGCAATTCTCAGCGATTTCGAGATGATCAAGGTGATTTGCCTGTGGATACAATCGTGGTTGACAATAATGTCCCTAAAAGCAATTTTAATGTCCCAGAATACACAGAGAACGGCAAAGAAAAGAAATCTAATTCTTATCTGGATGAGAAGAAAACTTATTCCAATGAGGGTGAGAAGTATGATTCTAATGAAAATCAATCAGATGGTCCTAGTGAAACAACTGATAGTAAGACAGCAGAGAAGGTAGAACAAAGGATCAATGACTCTGATGATAGCTCTAGTGAGAAGAAAACAGATGATTATGTGAAGAATAAGAGTTCAAAGGCGGTTTATCCTTCTGGGGCACAGTCAGAGGTTCTGAAGGAAAGTAAGACTCGAATTGGTTCCTTTTCAACTCAGGCATCAGAGTCAAAGAGTGAAAAAGAGTCTCAAAATTTATCTAAGCAGCCTTCTGGCCAGTACAATTGGAAAGTTTGCAATGTCACTGCTGGTCCTGATTTCATCCCATGCCTTGACAACTGGCAAGCAATTAGGAATCTCCGGACCACTAAGCACTATGAACATCGAGAAAGACATTGTCCTGCTGAAGCTCCTACCTGCCTTGTTCCTATTCCTAAAGAATATAGAACTCCGATTGAGTGGCCTAGAAGCAGAGATAAGATATGGTATCACAATGTTCCACACACTATGCTTGCTCAATACAAGGGGCACCAGAATTGGGTAAAAATGGCTGGCGAGTACCTTACTTTTCCTGGTGGTGGAACTCAGTTCCAGCACGGGGCACTTCATTACATTGACTTCATACAACAGTCTGTACCTGAAGTTGAGTGGGGAAAACACACGCGTGTGGTATTAGATGTTGGATGTGGTGTTGCCAGCTTTGGAGGCTTTCTCTTTGAGAGGGATGTACTCACTATGTCATTTGCTCCAAAGGATGAACATGAAGCTCAGGTCCAATTTGCACTTGAAAGAGGAATTCCTGCTATATCAGCTGTCATGGGCACAAAGACGCTTCCCTTCCCAGGGAAGGTATTTGACGCTATCCATTGTGCACGCTGTAGAGTTCCATGGCATGTAGAAGGTGGTAGGCTTCTCTTGGAGCTGAATCGAGTATTGCGACCTGGTGGTTTGTTTTTGTGGTCTGCTACTCCTGTTTATCAGAAGGAAGAAGAAGATGTTGAAATATGGGAAGCCATGAAAGTGCTAACAAAAGGAATGTGCTGGGAAGTTGTGTCGATCCAAAGGGATAGACTCAATAAAGTGGGTATAGCTATTTACAGGAAGCCAACATCTAATGAGTGCTACATGAAACGTTCAAAGGATGAGCCTAGTCTCTGTCCAGACTTTGATGATCCTAACGCAGCATGGAACGTTCCATTACAAACTTGCATGCACAAAGCACCTGAGAATTCAACTGAGCGTGCATATAAATGGCCAGAGGAATGGCCAGCAAGACTGTCCAAACCACCATACTGGTTGTTGAGTTCCCACGTTGGAGTTTATGGAAAGCCCGCCCCTGAAGATTTTACCGATGATTATGAAAACTGGAAAAATATAGTATCTGGGTCTTATCTTAATGGGATTGGAGTTGATTGGTCAAAAGTTAGGAATGTCATGGATATGAGATCTGTTTATGGAGGTTTTGCTGCAGCTTTGATGGATTTAAACATTTGGGTGATGAACGTGGTTTCAATAGACGCAGCTGACACTCTTCCTATTATTTACGAGCGTGGCCTTTTTGGCATATATCATGATTGGTGCGAATCATTCAGCACTTATCCTAGGAGTTATGATCTCCTCCATGCCAATAATCTGTTTTCCAAGCTTAAGAAGAGTTGCAATTTGACAGGTGTAGTTGCTGAGGTTGATCGGATTCTGAGGCCAGGAGGAAAGTTTCTGGTTCGAGACAAATCTGAGATGATTAAGGAAATGAAGGGGATGGTGAAGTCTTTGCATTGGGAAATCCTCACGAGTCACTCTAACGATAAGAATGGATTTCTATGCGCCCAGAAGTCCACTTGGAGGCCTAAGAAGAAGGAGACACTCTTGTATGCTCTTGCTCTTCCTAAGGATCTTCGACGTGATCAAGATATCGATAAGCTGCATACAATACCACTCGACCTCTCTAAGATCATGGAAGATGAGAGCTACAACAATTTGCCAAATGGGGTCATTTCAGAAAGCCCTGAAAGTCCCACCTTAAAGACATCAAGCGCCATCAACAACAACGTTAACAACAATAAAGAACAGGATCGCTTTCTCCCCATAGCCAATGTGGGAAGAATCATGAAGAAAGTGATGCCTCCGAATGGGAAAATCTCAAAGGACGCCAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGCTTCGTCACTGGGGAAGCATCTGATAAATGCCAGAGAGAGAAGAGGAAGACCATCAATGGAGATGATATTATATGGGCAATCACAACCCTAGGGTTTGATGATTACGTCGACCCTTTAAAATGTTACCTTCAGAAGTATAGAGACATAGAAGGAGAGAAGCTTAATATTCCAAAACACCAACGTTCTGAACAAAGGCTTCATCACCACCACAATCACCAAGACCAGACTAATAATATTAATAACAATAATAATTTGCCTTTAAGTAGTGTATATTCTTCCACAAATCTAATTTCTCAGCCTCCCTATGTGCCTGGTGGCCAGCCATATACTCTACCTTTCTCCCCAAATTCTATCAAACAGGACCAGATTGATTCGGTTGGACACTGGGTGAAAGTGGGTCATCTTCTTCTTCTTCCGGTTGCTGATGAAGAGAACAAAGAGCATGCATATGCTTTAGCTCCTAAGATCTGTTCATAA 3063 0.4218 MAPGKYSRLDNKRSSSSYGSTVTVVMFVGLCLVGVWMMTSSSVVPVQNADQENKIEVKENTEVEKQVNDINKGNSQRFRDDQGDLPVDTIVVDNNVPKSNFNVPEYTENGKEKKSNSYLDEKKTYSNEGEKYDSNENQSDGPSETTDSKTAEKVEQRINDSDDSSSEKKTDDYVKNKSSKAVYPSGAQSEVLKESKTRIGSFSTQASESKSEKESQNLSKQPSGQYNWKVCNVTAGPDFIPCLDNWQAIRNLRTTKHYEHRERHCPAEAPTCLVPIPKEYRTPIEWPRSRDKIWYHNVPHTMLAQYKGHQNWVKMAGEYLTFPGGGTQFQHGALHYIDFIQQSVPEVEWGKHTRVVLDVGCGVASFGGFLFERDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTKTLPFPGKVFDAIHCARCRVPWHVEGGRLLLELNRVLRPGGLFLWSATPVYQKEEEDVEIWEAMKVLTKGMCWEVVSIQRDRLNKVGIAIYRKPTSNECYMKRSKDEPSLCPDFDDPNAAWNVPLQTCMHKAPENSTERAYKWPEEWPARLSKPPYWLLSSHVGVYGKPAPEDFTDDYENWKNIVSGSYLNGIGVDWSKVRNVMDMRSVYGGFAAALMDLNIWVMNVVSIDAADTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHANNLFSKLKKSCNLTGVVAEVDRILRPGGKFLVRDKSEMIKEMKGMVKSLHWEILTSHSNDKNGFLCAQKSTWRPKKKETLLYALALPKDLRRDQDIDKLHTIPLDLSKIMEDESYNNLPNGVISESPESPTLKTSSAINNNVNNNKEQDRFLPIANVGRIMKKVMPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFDDYVDPLKCYLQKYRDIEGEKLNIPKHQRSEQRLHHHHNHQDQTNNINNNNNLPLSSVYSSTNLISQPPYVPGGQPYTLPFSPNSIKQDQIDSVGHWVKVGHLLLLPVADEENKEHAYALAPKICS 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0293 1020 MobiDBLite consensus disorder prediction 107 137 - -
Lele19g0293 1020 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 262 513 IPR029063 -
Lele19g0293 1020 Gene3D Vaccinia Virus protein VP39 314 494 IPR029063 -
Lele19g0293 1020 Coils Coil 46 66 - -
Lele19g0293 1020 ProSitePatterns NF-YB/HAP3 subunit signature. 856 872 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele19g0293 1020 Gene3D Histone, subunit A 814 947 IPR009072 GO:0046982
Lele19g0293 1020 MobiDBLite consensus disorder prediction 146 176 - -
Lele19g0293 1020 SUPERFAMILY Histone-fold 822 935 IPR009072 GO:0046982
Lele19g0293 1020 MobiDBLite consensus disorder prediction 181 223 - -
Lele19g0293 1020 MobiDBLite consensus disorder prediction 923 944 - -
Lele19g0293 1020 FunFam probable methyltransferase PMT23 328 512 - -
Lele19g0293 1020 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 825 889 IPR003958 -
Lele19g0293 1020 MobiDBLite consensus disorder prediction 95 223 - -
Lele19g0293 1020 FunFam Nuclear transcription factor Y subunit B-3 814 939 - -
Lele19g0293 1020 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 238 740 IPR004159 GO:0008168
Lele19g0293 1020 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 22 747 IPR004159 GO:0008168
Lele19g0293 1020 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 540 719 IPR029063 -
Lele19g0293 1020 CDD AdoMet_MTases 356 451 - -
Lele19g0293 1020 PRINTS CCAAT-binding transcription factor subunit A signature 891 909 - -
Lele19g0293 1020 PRINTS CCAAT-binding transcription factor subunit A signature 872 890 - -
Lele19g0293 1020 PRINTS CCAAT-binding transcription factor subunit A signature 853 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0293 Lele-ChrLele19 1741430 1747511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0293 795 991 CCAAT-HAP3 Transcription Factor Family AT2G13570 60.280 6.06e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele19g0293 Methyltransf_29 7.2e-223 CL0063