Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0287 ATGACGATTCCTCACTTGTTCAGATGCCCAATCAGTCTCGACTTGTTTGAGGATCCTGTAACCTTATGCACGGGCCAAACCTACGATAGGTCGAGCATAGAAAGATGGCTTGCTCAAGGTAATCTCACTTGTCCTGTTACAATGCAGAAGCTTCATGATCTATCCATCGTCCCCAATCACACTCTTCGTCATTTGATCCATCACTGGCTTCAATTCTACCCTCAAGTTGACCACTTTGGTAACTCTAAAACCATCGATTCTCTTGCCTCCCTGAAACGCACCCTTCAATCTCAGGATTCCACCTTCCAGAACAAACTCCAAGTACTTGAAAATATCAGGCTTTTATCCGATGAATATTGCTCTTTCAAGAAATCTTGCTTCCTCCAACTGGGTTTCTTGCCTCTTCTTTTGGGACTTGTTTTTGGAACTCAAATATCCAAAGAGAACCATCATCACAACATGGAGTTCATAGAGCTAGCTCTTTCTTGCATTTTGAAGTTGTTACCTCTTGACAATACCTCAGAGCCTCTAAATATTCTCAAAGAAGAACCTAAACTAGAATCGTATCTTGTATTATTCGAAAAGGGAAGTCCCAATATTAAAACCAGTCTGTGTAATCTGATAGATTCAGCTGCTACAGCACATTTAGAAGAGGTTTTGGTTATGCTTGGAAACTCCCAGAAACTACTCAGTGAAATTGTTCATCTTGTAAGCCAAAATAACTGTGAGGCTTCAAGGGCTGCTATTAAAGCCATATCAGCGTTATGTTCATTGCAATCAAATAGAGAGAATCTGGTAAAAGCAGGGGCGATTGATGGAATCATGAGGTACATTTCAGGGTGTGAAGCGAGAGAGAAGAACTTGGCTCCTTTGGGGATGGAGATAATAGAGAAGCTTCTGGTAATAGAGAGAGGCAAAGAAGCATTAGTGAATAGTCCAAATGGGATTCAAAGTTTGGTGAAGATGGTGTTCAGAGTGAGTAATCAAGAGTGCAGTGAGAATGCTGTGGGGCTTCTGATAATGGTGTGCGAAGAAAGTGGGCGAGCTAGAGAAGAAGCCTTTGAAGGAGGAGTTTTAACTCAGTTGCTTTTGCTTCTGCAGAGCCAATGTAGTGCTAAGACGAAGACGAAGGCAAGAAAGCTTCTGAAATTGCTAAGATCCAAGTGGGCTGAGAAAGTACCAAAAGAGGCCTAA 1194 0.4196 MTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIERWLAQGNLTCPVTMQKLHDLSIVPNHTLRHLIHHWLQFYPQVDHFGNSKTIDSLASLKRTLQSQDSTFQNKLQVLENIRLLSDEYCSFKKSCFLQLGFLPLLLGLVFGTQISKENHHHNMEFIELALSCILKLLPLDNTSEPLNILKEEPKLESYLVLFEKGSPNIKTSLCNLIDSAATAHLEEVLVMLGNSQKLLSEIVHLVSQNNCEASRAAIKAISALCSLQSNRENLVKAGAIDGIMRYISGCEAREKNLAPLGMEIIEKLLVIERGKEALVNSPNGIQSLVKMVFRVSNQECSENAVGLLIMVCEESGRAREEAFEGGVLTQLLLLLQSQCSAKTKTKARKLLKLLRSKWAEKVPKEA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0287 397 Pfam U-box domain 3 71 IPR003613 GO:0004842|GO:0016567
Lele19g0287 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Lele19g0287 397 CDD RING-Ubox_PUB 7 49 IPR045210 -
Lele19g0287 397 SUPERFAMILY RING/U-box 2 71 - -
Lele19g0287 397 SMART Ubox_2 6 69 IPR003613 GO:0004842|GO:0016567
Lele19g0287 397 SUPERFAMILY ARM repeat 90 372 IPR016024 -
Lele19g0287 397 PANTHER WDSAM1 PROTEIN 2 391 IPR045185 GO:0061630
Lele19g0287 397 Gene3D - 75 397 IPR011989 -
Lele19g0287 397 FunFam RING-type E3 ubiquitin transferase 3 74 - -
Lele19g0287 397 ProSiteProfiles U-box domain profile. 2 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0287 Lele-ChrLele19 1708078 1709271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0287 3 391 U-box Gene Family AT3G19380 31.695 2.62e-45 159