Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0268 ATGAGTGGAAGTAGCAGAAGGCGTTCCTCAAAGTGGGATTTAAGGGATGAACCTGAGTTTGTACCTGACAGTAAGCAATTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAATTCAAAATGGTCTTATTTGGATGGGAATGAGAAGCTAAAACCTAATATGCGATTACCATTCAAGGAACCTTTTTCTGGAGGCAGAGTTTCTAATAAGGATGATATCATGAATAAAGACTATAATAGAGATTTGGATACCAAAATGGCATGGGACGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGTAAGAGGCACAGTCGTTCCCCAACAAATGGTTTAGACAGGAGTAGAAGCCGAAGCCGGAGCCCTGCCCATGGTTTTAGGTGGGAATCAGGAGTCAATGACAGAAATAAAATGAGAGCTGGAGGATTGCCACAACCATGTAGGGATTTTGCTGTTGGAAAATGCAGAAGAGGTAGCCGTTGCCATTTTCTTCATCATGACGATCGAAATTATGAGGATGGCTGGGTCAGTAGAAACAGGAAAGATGGACCTCCCAGATATTCTGCTCCCTATGAAAGCAGGGATTATTCTACTAGGAGTGGAAGATCAAATGAGACTTGTATCAATTTTGCACAAGGCAAATGTAGAATGGGAGCATCTTGCAAATACGTGCATCATAGCAATTCTGATGATATGAGCAAAGGAAAAGTAGATGATTCATCTAGCCGGGAGAGTTCTTTCGAGCGTGGTGGTGGGCATGAGCCAAACCGCTTTAGTGATACTCCCTGCAAATTTTATGTTGCAGGAAGTTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATATTCAGGCATCTAGGAGCCCAAATAGAAGAAGAGATGACAGGTGGGGGAACATTCCAGGCGGAGATCGGGCATTGGATAGACCAAGAGGGAGTAACTCAGTTAGTCCTAGTAGAAGGACAAGAGATGATAGATGGGGTCCAGATGGCAACATGGTTGACATGGATAAAATGTGGGATGGTCCAAAACTGAATGACGTTGCTGTCTCGGATACAGCAAAGCTGAGTGAAGATAAGAGTGGAAATATGGGTATACCAGAACCTGGATTCACTACTTGGCCCAGGATTGATGGATGGGGCGATAATTTAGATAACAATAAAGTGTATGCTGAGCCACCATTTGTGGCTGACAAGAAGAAAGCAGAGCAATGGAAGACAGAAAATGCTGGTGCTACCATGGGTGCTACCCAATCAATTGGGCCTGACAAACGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGTGGATCTTCTGGGCATATTGAAGACAAGAGTGGGCAGAATAAACATGGTTTGACTCAGGGTGGTGCATATTTAGCCACCTCCGAACATCACAGATTACAAGTTGCTCCAGGACAAGGTTTCGATCAGAACTCACAGAATGCAAATGCTTTGCGTCCTTCTAGCTGTAATCTGGTTGTACAGAGTCAAGGGGCAGTCCCTGTTGTTCCTCCGCTTGGAGGGATAGCTGAAGCTATACAGAACCAAGCATCTTCTGCAAAAAAGTACAGTGTTGAGCCAAATGTCATGGATGCAAGCTTATCGCATGTTAGTACAATAAATACTCCAACGCAAAACACGGTGAGCAATGAACAGCTTGCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCATTTCCTGGGAACAGGTCAGCAACTTCCACAAATTTATGCTACTCTAAATTCTCATGATGTGAAGGACACATCCTCCCTAGCCAAAACTGAAGTGTCTGGGGAGCCTGTTTCCAGTGCATACATCAAGCCAGATCCTGTTATTGGATCCCAGAAGCAGTATGATCCAATGAGTGATAGTATGGAGCCAAAGAAGACTGATGCAGGTGGAATTAGGCCACCCTTTTCTCCTAGTAAAACAATTGCTAATAGTTCAGTGAGACAAAATCTTGGTGATTCTTGTAAGACTTCAGAAGAACAAATTGTCAAGAGTGAAAATTTAAACCCTTTGCAGTCAGGTCAAAAAGTTGAAGCTAATAAGGGAAACGATGAAGTGGCAGCTGAGGAAAGGCGACATTCTCGAGCAGATGATAGAAATGCAAAAGATAATGGTCCTTCAGAAAATATGGACCAAAATGGGCCTGATGAGACGAAGAAAACGAAGGATATGAAGGGGATTCGTGCTTTTAAATTTGCTCTGGTTGAGTTTGTTAAAGAGCTTCTGAAACCAACATGGAAAGAAGGTCATATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACTGTGCAGGGGGCTCATATACCTCAGACACAAGAAAAAATTGATCACTATTTGTCAGTTTCGAAACCAAAGCTTAACAAACTTATACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2475 0.4287 MSGSSRRRSSKWDLRDEPEFVPDSKQLRSGWSSANVTGSNNSKWSYLDGNEKLKPNMRLPFKEPFSGGRVSNKDDIMNKDYNRDLDTKMAWDADESYGMKMSPGLEEWKRKRHSRSPTNGLDRSRSRSRSPAHGFRWESGVNDRNKMRAGGLPQPCRDFAVGKCRRGSRCHFLHHDDRNYEDGWVSRNRKDGPPRYSAPYESRDYSTRSGRSNETCINFAQGKCRMGASCKYVHHSNSDDMSKGKVDDSSSRESSFERGGGHEPNRFSDTPCKFYVAGSCRNGKYCRFSHDIQASRSPNRRRDDRWGNIPGGDRALDRPRGSNSVSPSRRTRDDRWGPDGNMVDMDKMWDGPKLNDVAVSDTAKLSEDKSGNMGIPEPGFTTWPRIDGWGDNLDNNKVYAEPPFVADKKKAEQWKTENAGATMGATQSIGPDKRLVDAEMSPDWNYGSGSSGHIEDKSGQNKHGLTQGGAYLATSEHHRLQVAPGQGFDQNSQNANALRPSSCNLVVQSQGAVPVVPPLGGIAEAIQNQASSAKKYSVEPNVMDASLSHVSTINTPTQNTVSNEQLAQLSSLSASLVHFLGTGQQLPQIYATLNSHDVKDTSSLAKTEVSGEPVSSAYIKPDPVIGSQKQYDPMSDSMEPKKTDAGGIRPPFSPSKTIANSSVRQNLGDSCKTSEEQIVKSENLNPLQSGQKVEANKGNDEVAAEERRHSRADDRNAKDNGPSENMDQNGPDETKKTKDMKGIRAFKFALVEFVKELLKPTWKEGHINKEHYKTIVKKVVDKVTGTVQGAHIPQTQEKIDHYLSVSKPKLNKLIQAYVEKVQKA 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0268 824 MobiDBLite consensus disorder prediction 182 211 - -
Lele19g0268 824 ProSiteProfiles Zinc finger C3H1-type profile. 150 177 IPR000571 GO:0046872
Lele19g0268 824 Pfam CCCH-type zinc finger 271 291 IPR041367 -
Lele19g0268 824 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Lele19g0268 824 SMART c3hfinal6 211 236 IPR000571 GO:0046872
Lele19g0268 824 SMART c3hfinal6 152 176 IPR000571 GO:0046872
Lele19g0268 824 MobiDBLite consensus disorder prediction 96 151 - -
Lele19g0268 824 Gene3D - 261 300 - -
Lele19g0268 824 MobiDBLite consensus disorder prediction 182 197 - -
Lele19g0268 824 MobiDBLite consensus disorder prediction 8 23 - -
Lele19g0268 824 MobiDBLite consensus disorder prediction 26 47 - -
Lele19g0268 824 MobiDBLite consensus disorder prediction 1 78 - -
Lele19g0268 824 MobiDBLite consensus disorder prediction 654 695 - -
Lele19g0268 824 SUPERFAMILY CCCH zinc finger 269 291 IPR036855 GO:0046872
Lele19g0268 824 MobiDBLite consensus disorder prediction 236 263 - -
Lele19g0268 824 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 823 - -
Lele19g0268 824 MobiDBLite consensus disorder prediction 698 721 - -
Lele19g0268 824 MobiDBLite consensus disorder prediction 104 132 - -
Lele19g0268 824 ProSiteProfiles Zinc finger C3H1-type profile. 266 293 IPR000571 GO:0046872
Lele19g0268 824 MobiDBLite consensus disorder prediction 327 341 - -
Lele19g0268 824 MobiDBLite consensus disorder prediction 235 263 - -
Lele19g0268 824 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 175 IPR000571 GO:0046872
Lele19g0268 824 MobiDBLite consensus disorder prediction 294 349 - -
Lele19g0268 824 MobiDBLite consensus disorder prediction 604 738 - -
Lele19g0268 824 Pfam RNA-binding, Nab2-type zinc finger 216 234 - -
Lele19g0268 824 ProSiteProfiles Zinc finger C3H1-type profile. 210 237 IPR000571 GO:0046872
Lele19g0268 824 MobiDBLite consensus disorder prediction 294 311 - -
Lele19g0268 824 Gene3D - 153 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0268 Lele-ChrLele19 1591363 1595560 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele19g0268 zf-CCCH_4 9.1e-06 CL0537