Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0258 ATGGTGAGAGATGATCTGTGCGTCACAATTCCTAGCTTCTTTAGGTGCCCAATATCGCTCGATGTCATGAAATCCCCCGTCAGCCTCTGCACCGGAGTAACATACGATCGCTCCAGTATCCAGCGCTGGCTCGACGACGGCAACAACACCTGCCCCGCCACCATGCAGGTACTCCAATCCAAGGAATTTGTCCCTAACCTTACTCTGCAGAGGCTTATCCAGATCTGGTCCGACTCCGTTCGACACCGAATCGAATCTGCCGACTCCCCGGCTGCCAAATCGGTCCCGTCCCAAGACCAACTCGTCGCCGCTGTCCGAGATTTGGAGGGCAAGAGCGGGAACCCTTTGTGCTCCCTCTCTGGAATCCTATCCTTCGCCGGAGAATCCGAAGAGAACCTGGAATTCCTAGCCAACATAGAGGGATTAGTGCCTTTGCTCGTTGGTTACCTCGACAATGTCGATGGCGGAATTGCTCGGAGCGTTGAATTTCTTGATAAAGTTGTCAAGGCTTTGGATTTGGTCCTGAATAAAGCAAAAGACGACGAGACATTGAAGCATTCGATTGTGAAGAGCCAGGAAGGCAATTGTTTAGCTTCTCTACTTCTTGTTCTTCAACGAGGTAGCTCTGATTCGAAAATTGCATCGGCTAAGGTTTTGAAGTTCGCCGCTGCGGACGTTGAATCGAAAATCTTGATCGCTGAGAAGGAAGGCCTAATTCATGAATTGCTTAAAATGACATCAGACAAAGATGCGATGCTAATCAAGAACGGCTTATCCTGCTTGGTGGCAATCTCAACGCCGAAACGAAACAGGGCGAAATTGATCCATCTTGGAGCTGTGAAGAAATTATCGGAATTGCTTTCGGAGTCGAAGTGGAGCGTTTCCATCACCGAGAATGTACTGAAGCTGCTGGAAACGGTGTCGACGACCAAAGAAGGAAGGTTGTTGATTTGCGAGGACCCAAATTGCGTGGCGTCGATATTGCAGAAGGTCCTGAAAGTGTCAAATGTCGCAACGGAGCACGCAGTGACTATACTTTGGAGCGTGTGTTATCTATTTCGTCATCAGAAGGCGCAGGAAGTGGTGACGAAGGCGAACGGTTTGACCAAGATTCTGCTTCTGATGCAGAGCAATTGTTCTCTGGGAGTTCGTCAAATGTGCGCCGATTTGCTCAAGATTTTCCGGGTTAACTCCAAATCATGCCTCTCGTGCTACCATACCAAGACCACCCACCTCATGCCCTTTTGA 1248 0.4944 MVRDDLCVTIPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQVLQSKEFVPNLTLQRLIQIWSDSVRHRIESADSPAAKSVPSQDQLVAAVRDLEGKSGNPLCSLSGILSFAGESEENLEFLANIEGLVPLLVGYLDNVDGGIARSVEFLDKVVKALDLVLNKAKDDETLKHSIVKSQEGNCLASLLLVLQRGSSDSKIASAKVLKFAAADVESKILIAEKEGLIHELLKMTSDKDAMLIKNGLSCLVAISTPKRNRAKLIHLGAVKKLSELLSESKWSVSITENVLKLLETVSTTKEGRLLICEDPNCVASILQKVLKVSNVATEHAVTILWSVCYLFRHQKAQEVVTKANGLTKILLLMQSNCSLGVRQMCADLLKIFRVNSKSCLSCYHTKTTHLMPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0258 415 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lele19g0258 415 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lele19g0258 415 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lele19g0258 415 PANTHER WDSAM1 PROTEIN 9 403 IPR045185 GO:0061630
Lele19g0258 415 Gene3D - 294 403 IPR011989 -
Lele19g0258 415 Gene3D - 165 293 IPR011989 -
Lele19g0258 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
Lele19g0258 415 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Lele19g0258 415 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lele19g0258 415 SUPERFAMILY RING/U-box 6 78 - -
Lele19g0258 415 SUPERFAMILY ARM repeat 129 395 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0258 Lele-ChrLele19 1548230 1549477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0258 1 415 U-box Gene Family AT5G09800 51.799 1.27e-137 398