Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0254 ATGTATGCTTCTCCTTCTTCCTCTGGTTCGCTGCTTCTCCAGGATCTTCTTGGGGATTTACATTCCCGAAGGTTGCTCCTTCCACCCAACCCACTTAACTCACAGGCTCCGGCTTCCTTAAACACCCACAATTCCACAGACAAGTACCTCGGGAATGGCAATTTTGATGCCAATGTTGTTATGGTGCTCTCGGTGTTGTTGTGTGCTCTTATTTGCTCTCTAGGCTTGAACTCCATCATAAGGTGTGCCCTGAGGTGCTCCAATCTGGTGGTCAACATCGAGCCCGCTGCGACAAGCCCTCCGGCTCGATTGGCCAACACCGGAGTGAAGAAGAAAGCTCTCAAGACTTTCCCCACAGTAAACTACTCCGCCGACCTGAAGCTTCCAGGTTTGGACACGGAGTGCGTGATATGCTTGTCAGAGTTCGCCAATGGCGAAGGCGTCAGAATTTTGCCAAAGTGCAACCATGGCTTCCACGTGAAATGCATTGACAAGTGGCTGAGCTCACACTCGTCTTGTCCTAAGTGCAGACAGTGCCTAATTCAAACTTGCCAGAAGATTGTTGGATGCACCACGACTCAGGCTAGCTCGTCCGAGCCACCTGAAACCATTATCAGGATCGCGCCTCTCGGACCAGAAGGTTTGGTTCACGACTACAGGGGAGCTGTGAGCACTTAG 678 0.5147 MYASPSSSGSLLLQDLLGDLHSRRLLLPPNPLNSQAPASLNTHNSTDKYLGNGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVNIEPAATSPPARLANTGVKKKALKTFPTVNYSADLKLPGLDTECVICLSEFANGEGVRILPKCNHGFHVKCIDKWLSSHSSCPKCRQCLIQTCQKIVGCTTTQASSSEPPETIIRIAPLGPEGLVHDYRGAVST 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0254 225 FunFam RING-H2 finger protein ATL73 97 182 - -
Lele19g0254 225 PANTHER RING-H2 FINGER PROTEIN ATL78 15 215 IPR044602 GO:0016567|GO:0016740
Lele19g0254 225 CDD RING-H2_PA-TM-RING 134 177 - -
Lele19g0254 225 SUPERFAMILY RING/U-box 114 182 - -
Lele19g0254 225 Pfam Ring finger domain 134 177 IPR001841 -
Lele19g0254 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 182 IPR013083 -
Lele19g0254 225 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Lele19g0254 225 SMART ring_2 135 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0254 Lele-ChrLele19 1509719 1510396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0254 40 215 C3H Transcription Factor Family AT1G76410 44.068 1.09e-41 138