Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0246 ATGGATTTGGACGATTTCCGATCCATATTGGAGACTGCGGGCGTTGACGTGTGGACTTTTATCGACACCGCAATCACCGTCGCTTCCTTGGATTACGGCAATGACTTGAAGTATCGCAGGGATGGAATCGTCGAGCGCCTCTATGCCGCTACTTCTGCTCCTGCGTCCTGTCGGAATTGCGAAACCAATTATCTCAGCTCTCCAATCAAGAAGCAAAGCGGCCCTCTCCCCGACAAAAGTCGTGCCTCGCCTGCAACGCCGCAATCCCTGGGTAAAGACGACAACGAAGACGACGAGGAGATAGATCCTTACGGAGGTCTGTTCGATGATGAGCAGAAAAAGATTCTGGAGATTAAAGAGCTACTTGAACACCCTAGCCAGTCTGAAGAATCATTGGTGGACTTGCTACAAAATCTTGCAGACATGGATATCACATTCCAAGAGCTGAAGGAGACTGACATTGGGAGGCACGTGAATCGTTTGCGAAAGCATTCGTCCAATGATGTTCGGAGATTGGTGAAGCTCCTTGTCAGGAAGTGGAAAGATATTGTCGATGAATGGGTGAAGTTTAACCCACCAGCAGAGCACGCCTCGCTTATGGCTGATGGAGACTCGCCTCAGCCCAAAACCACCTCCCAAAACGGCTATCATCAGATTCCTGATTTTGCTTACTCGCCAAATCCACATAATGGGAGTTCTGGGTCGGACCGGAACAATTCAGAGGCAGAACTAAAACCAAAACCAATTCCTCGGAAAGAAGCTCCGCCAAAACCAGCGCCATCTGTCTCTATATCTGCTTCTGCTCCGCCTCAAAACAGACAGAGAGAACAGAGGGAAAGCAATTTTGACGCGGAGAGACTTGCTTCGGCTAGAAGGCGGCTTCAAGAGAACTACAAAGAAGCGGAAAATGCCAAAAAGCAAAGAACCATTCAGGTGATGGACATCCATGAGCTACCAAAACCAAAAACCAAGAATGCCTTCTTTGCGAAGAACAAAGGCGGCGGCGGTTCCCAGGGAAGGCACTGGTGA 1029 0.4937 MDLDDFRSILETAGVDVWTFIDTAITVASLDYGNDLKYRRDGIVERLYAATSAPASCRNCETNYLSSPIKKQSGPLPDKSRASPATPQSLGKDDNEDDEEIDPYGGLFDDEQKKILEIKELLEHPSQSEESLVDLLQNLADMDITFQELKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKDIVDEWVKFNPPAEHASLMADGDSPQPKTTSQNGYHQIPDFAYSPNPHNGSSGSDRNNSEAELKPKPIPRKEAPPKPAPSVSISASAPPQNRQREQRESNFDAERLASARRRLQENYKEAENAKKQRTIQVMDIHELPKPKTKNAFFAKNKGGGGSQGRHW 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0246 342 MobiDBLite consensus disorder prediction 196 288 - -
Lele19g0246 342 CDD TFIIS_I 112 185 - -
Lele19g0246 342 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 342 IPR044790 -
Lele19g0246 342 MobiDBLite consensus disorder prediction 67 104 - -
Lele19g0246 342 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 113 194 IPR035441 -
Lele19g0246 342 MobiDBLite consensus disorder prediction 317 342 - -
Lele19g0246 342 SMART TFS2_5 115 186 IPR003617 GO:0005634
Lele19g0246 342 ProSiteProfiles TFIIS N-terminal domain profile. 110 187 IPR017923 -
Lele19g0246 342 Coils Coil 284 311 - -
Lele19g0246 342 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 109 197 IPR035441 -
Lele19g0246 342 Coils Coil 132 152 - -
Lele19g0246 342 MobiDBLite consensus disorder prediction 204 239 - -
Lele19g0246 342 Pfam TFIIS helical bundle-like domain 135 184 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0246 Lele-ChrLele19 1468750 1470789 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele19g0246 Med26 3.9e-12 No_clan