Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele19g0237 | ATGGACTTTGACGAATACGATTACTTGGAGAAGACAGTGGAGGAGCAGGAAGATCGATATTCGAAGAAGAAGAAGAAAGAGAGCGGTGAGAAGGGTGAAAGGAGTTACAGGGAGCGCGAGGTGGACGAGCATCTGGACAGTGAAGAAAAGAAGAGCAAGAAGACCAGAGGGGGCGAGGAGAATGAGTCAAAGAAGGATCGTGATGACCTCGACAGAGAACGGTCTAGACGCGAAAAGGAGCGCCGTAGGAGTGGCAAGGAGAGGGACGGGGAGAGAGATGGGGATAGAGAGCAAGAGAGGAGTAATAGAGAGAAGGATAGGGAGAAGGAGAGAGACAAAGAGAGGGATAGAGAAAGAAGAGATAAAGAGAGGGAGAGGAGAGAGAGGGACAAAGAGAGGGAAAGAGAACGGGAGAGGGAGGAGAGAGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATAGAGATAGAGAGAGGGAACGAGAACTGGAAATTAGAGATAGCCGGAGATTCAGAGACAAGAAAGAGGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTATTTGCATATCAGATGCCCTTAAAGGCCACTGAGAGAGATGTTTATGAATTTTTCTCAAAAGCTGGGAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAATTCAAGACGGTCTAAAGGAGTTGGGTATGTTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGTCAATTGCTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACTGGAGCTGCAGGTGTAGCAGGACCATATGGAGCAGTAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAGAGTCAGCTGAGGGAAATTTTTGAGCCTTTTGGTCCAGTGGAGCTTGTGCAGCTGCCTACTGACATGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTTCCCATCTTGAACATGCCAAAGCAGCTCAGAGTTTAAATGGAAAACTGGAGATTGCTGGTAGGACTATCAAGGTCTCATGTGTGACAGATCACATGGGGAGCCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCCTTAAATGCTCACTCTAGAGCATTGCTTATGCAGAAGCTGGATCGATCTGGCATTGGTACAAGCATTGCAGGGTCTGTTGGTGTGCCCATTGTGAATGGGTCCGTACCTGGTCAACGGTCTGTTAGTTTGCCTACTGCTCCAGGTTTAATGCCCACACCAGCCCCCCCAGCACAAATCACGCCTTCCCCTGTGGTAGAACCTGTAGGAAGTCCTAGCGAGTGTCTACTGTTGAAGAATATGTTTGATCCTACCACTGAGACAGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAGATTTGGCCGGGTGAAGCATATTTATGTAGACAAAAGTGCAGGATTTGTATATTTGCGGTTTGAATCAGTGGAAGCAGCAAGTGCTGCTCAACGATCTATGCACTTGAGATGGTTTGCACGCAGGACGATTTCAGCTATTTTCATGGAACCCCAGCTATATGAAGCCAAGTTTAAAGCGGAAGCTTGA | 1671 | 0.4674 | MDFDEYDYLEKTVEEQEDRYSKKKKKESGEKGERSYREREVDEHLDSEEKKSKKTRGGEENESKKDRDDLDRERSRREKERRRSGKERDGERDGDREQERSNREKDREKERDKERDRERRDKERERRERDKEREREREREERERSRRSRSRSDRDRERERELEIRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPTDMETGHCKGFGFIQFSHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHMGSQDTTAKSADFDDDEGGLALNAHSRALLMQKLDRSGIGTSIAGSVGVPIVNGSVPGQRSVSLPTAPGLMPTPAPPAQITPSPVVEPVGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSRFGRVKHIYVDKSAGFVYLRFESVEAASAAQRSMHLRWFARRTISAIFMEPQLYEAKFKAEA | 556 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele19g0237 | 556 | Coils | Coil | 6 | 26 | - | - | |
| Lele19g0237 | 556 | CDD | RRM1_RBM39_like | 189 | 261 | - | - | |
| Lele19g0237 | 556 | MobiDBLite | consensus disorder prediction | 1 | 158 | - | - | |
| Lele19g0237 | 556 | Gene3D | - | 459 | 556 | IPR012677 | - | |
| Lele19g0237 | 556 | MobiDBLite | consensus disorder prediction | 12 | 158 | - | - | |
| Lele19g0237 | 556 | FunFam | RNA-binding protein 39 isoform X1 | 181 | 273 | - | - | |
| Lele19g0237 | 556 | SMART | rrm1_1 | 464 | 541 | IPR000504 | GO:0003723 | |
| Lele19g0237 | 556 | SMART | rrm1_1 | 189 | 261 | IPR000504 | GO:0003723 | |
| Lele19g0237 | 556 | SMART | rrm1_1 | 291 | 364 | IPR000504 | GO:0003723 | |
| Lele19g0237 | 556 | TIGRFAM | SF-CC1: splicing factor, CC1-like family | 76 | 553 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Lele19g0237 | 556 | FunFam | Splicing factor CC1-like | 274 | 379 | - | - | |
| Lele19g0237 | 556 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 195 | 257 | IPR000504 | GO:0003723 | |
| Lele19g0237 | 556 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 486 | 538 | IPR000504 | GO:0003723 | |
| Lele19g0237 | 556 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 292 | 362 | IPR000504 | GO:0003723 | |
| Lele19g0237 | 556 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 290 | 368 | IPR000504 | GO:0003723 | |
| Lele19g0237 | 556 | SUPERFAMILY | RNA-binding domain, RBD | 181 | 269 | IPR035979 | GO:0003676 | |
| Lele19g0237 | 556 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 553 | - | - | |
| Lele19g0237 | 556 | Coils | Coil | 113 | 148 | - | - | |
| Lele19g0237 | 556 | Gene3D | - | 118 | 274 | IPR012677 | - | |
| Lele19g0237 | 556 | Coils | Coil | 551 | 556 | - | - | |
| Lele19g0237 | 556 | SUPERFAMILY | RNA-binding domain, RBD | 290 | 543 | IPR035979 | GO:0003676 | |
| Lele19g0237 | 556 | CDD | RRM2_RBM23_RBM39 | 292 | 364 | - | - | |
| Lele19g0237 | 556 | Gene3D | - | 286 | 382 | IPR012677 | - | |
| Lele19g0237 | 556 | CDD | RRM3_RBM39_like | 462 | 543 | - | - | |
| Lele19g0237 | 556 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 188 | 265 | IPR000504 | GO:0003723 | |
| Lele19g0237 | 556 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 383 | 481 | IPR029123 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele19g0237 | Lele-ChrLele19 | 1415808 | 1422089 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele19g0237 | 270 | 363 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 34.737 | 6.89e-08 | 53.5 |