Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0235 ATGTCAAAGGTGGCAAATCTGAGGGACAAGGCAGAGGAAGAAGGTGAACACAAAAGCAATCCCTTGACGTCTATGCCGATGATATTTCCAGATATCGATAGGGAGAAGGAGATGTCTGCTATGGTTTCAGCTTTGACCCACGTCGTGTCCGGCGAGGTGCCCTCTGATTATACGGATTTTCATCAATACTCAGCCTACCTTAATACAGTTGAAGCTTCAGCAACACCATCTTCTTCATTCTATGGTGCTAGTTCTGCTGCAACTATAAGTGTGGAAGATGGCACATTCTCACAGAGAGGTTCATCCTCATCCCCTGCTGTTACAGCAAATAGAGAAGGGAGGAACGGAAGAAACGAAATGAGGAATGCAGTATATGAATACAGAGCAGAGAACAGGAGGGAGCAGGGGAGAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGGAAGTGGGCCGCAGAAATCAGAGACCCATTCAAAGCAGCGAGGGTGTGGTTAGGAACATTTGAAACAGCAGAAGCCGCAGCCAGAGCATACGACGAAGCTGCTCTGCGTTTCAGAGGCAACAAGGCAAAGCTCAATTTCCCTGAAAATGTCACCCTACGTCCCCCAACCCCGAATCTTCACGGCTACGCTCAGATTGATCACATGATTCCACATCTTCAACCATCCCTAACGCCGCCGCCGGCTGCGTCCTCCTCCTCCTCGTTTTCTGCCTTTGCCTCCTCTGTTACGAGTACGATACTTCCTTCGCTTTATCCTGCACACACTCAAATCAGCGATTCTGAGTACTTAGTACCTTTATCGTTTTCTTCTGCCGGTCACACCTCCTTTTATTCTGGATGA 846 0.4858 MSKVANLRDKAEEEGEHKSNPLTSMPMIFPDIDREKEMSAMVSALTHVVSGEVPSDYTDFHQYSAYLNTVEASATPSSSFYGASSAATISVEDGTFSQRGSSSSPAVTANREGRNGRNEMRNAVYEYRAENRREQGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRPPTPNLHGYAQIDHMIPHLQPSLTPPPAASSSSSFSAFASSVTSTILPSLYPAHTQISDSEYLVPLSFSSAGHTSFYSG 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0235 281 Pfam AP2 domain 139 188 IPR001471 GO:0003700|GO:0006355
Lele19g0235 281 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
Lele19g0235 281 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700|GO:0006355
Lele19g0235 281 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Lele19g0235 281 MobiDBLite consensus disorder prediction 95 111 - -
Lele19g0235 281 MobiDBLite consensus disorder prediction 1 27 - -
Lele19g0235 281 FunFam Ethylene-responsive transcription factor 2 138 197 - -
Lele19g0235 281 MobiDBLite consensus disorder prediction 1 19 - -
Lele19g0235 281 Gene3D AP2/ERF domain 138 198 IPR036955 GO:0003700|GO:0006355
Lele19g0235 281 SUPERFAMILY DNA-binding domain 139 197 IPR016177 GO:0003677
Lele19g0235 281 MobiDBLite consensus disorder prediction 95 116 - -
Lele19g0235 281 PANTHER DNA-BINDING DOMAIN 104 231 IPR044808 GO:0003700|GO:0009873
Lele19g0235 281 ProSiteProfiles AP2/ERF domain profile. 139 196 IPR001471 GO:0003700|GO:0006355
Lele19g0235 281 SMART rav1_2 139 202 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0235 Lele-ChrLele19 1404563 1405693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0235 129 227 AP2-EREBP Transcription Factor Family AT5G61890 63.725 1.24e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele19g0235 AP2 1.9e-14 CL0081