Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0226 ATGGATATTTCCCACAGAAACAGAACTCTGCTCAAGGTCATCGTCCTCGGCGATAGTGGGGTGGGAAAGACCTCGTTGATAAATCAATACGTCTATAAAAAGTACAGCCCACAATATAAGGCCACCATAGGAGCAGATTTTGTGGCGAGGGAAGTACAAGTGGATGACAAACTGGTGACTTTGCAAATTTGGGATACTGCAGGGCAGGAAAGGTTCCACAGTCTAGGTGCTGCATTTTACAGAGGAGCAGATTGTTGTGTTCTTGTCTATGATGTCAACATACAAAAAACTTTTGACACCCTAAACAACTGGCACGACGAGTTTCTTAAACAGTCAGATGCGAACGATCCGGAAGGATTTCCCTTTGTGCTACTTGGCAACAAGGTTGATGTAAACGGTGGACAAACTAGAATGGTTTCTGTGAAGAAAGCTACGGAATGGTGTGCTTCCAGGGGGAATATGCCTTATTTTGAGACGTCTGCTAAGGAGAATTACAATGTTGAGGAGGCATTCTTATGTGCTGCTAAAACTGCACTAGACAACGAACACGAAACAGAAATATATTTTCCAGGAATCTCGGAAACCGTATCAGAACCAGAGCAGCAACAACGAGCTGGTGGCTGGCAAACAATAGCAGGTCTTGGTGTCAACTGGGGATCACTAGCGTCTCACCCAGTGGATCCCCCCATTGTGGTAAACATGTTGACGGACAACGGAATCAACAAGGTTAAGCTTTTCGACGCAGATTCTTGGACGGTCAAGGCCTTCGCCGGCACGGACATCGAAGTCATGCTCGGAATTCCCAATGATCAATTGAATCGCTTTGCTCGTAGCTTCGACGACGCCAAGGATGGGGTCAAACATAATGTCTCCAAACATTTGGACAAGGGTGGGGTCAATATCAATCACTGTAGTCACTGTTGTTGGACCTTGATGGGTCCCTTTACACTGCCCATTATTGCTGAAGCCTCTTCCATATCATCTCCAGATGCTTGTACCAAGAGGACACAGAACTTATCGCTGAGAAAATCTTTTGCATCGGTTAGCATGGGAGAGGAAAGGCCTTTTGATTTTTTACGCACCTTATTTGAGGGCTTAGTTGCTGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCTATTGATACTATAAAGACACGCTTGCAGGCTGCCCGTGGAGGAGAAAAATTAGTGTTTAAAGGCCTGTATTCTGGATTGGCAGGAAATCTTGCCGGTGTCTTACCGGCATCTGCTCTTTTTGTTGGAGTCTATGAACCTGTAAAGCAGACACTGACGAGGATATTTCCAGAAAATCTGAGTGCTCTTGCTCATTTTACTGCAGGTGCCATAGGGGGCATTGCAGCTTCACTGATTCGTGTTCCAACAGAGGTTGTTAAACAACGAATCCAAACTGGGCAATTTACTTCACCTGTTATTGCTGTCCGCTATATTTCTTCTGTTGAGGGCCTTAAAGGACTTTATGCAGGATATGGGTCTTTTCTACTGCGGGATTTGCCCTTTGATGCTATTCAGTTTTGCATCTATGAGCAGCTTCGAATAGGTTATATGTTGGCGGCACGACGAAATCTGAATGACCCGGAAAATGCCATCGTCGGTGCTTTCGCTGGTGCACTGACTGGCGCTATAACTACTCCCCTTGATGTGATTAAGACGAGATTAATGGTTCAGGGAACTGCAAACCGATACAAAGGAATCGTGGATTGTGTTCAAACTGTCATCAAGGAAGAGGGGCCTCAGGCTTTTCTGAAGGGCATTGGGCCAAGGGTGCTTTGGATAGGGATAGGTGGCTCAATCTTCTTCGGCGTCTTGGAGGGCACAAAGCGTATCCTGGCCGAGAGGCGTCCTAATCCTCCTCAACCCTCTGACTCAAAGCTTCAGTGA 1908 0.4617 MDISHRNRTLLKVIVLGDSGVGKTSLINQYVYKKYSPQYKATIGADFVAREVQVDDKLVTLQIWDTAGQERFHSLGAAFYRGADCCVLVYDVNIQKTFDTLNNWHDEFLKQSDANDPEGFPFVLLGNKVDVNGGQTRMVSVKKATEWCASRGNMPYFETSAKENYNVEEAFLCAAKTALDNEHETEIYFPGISETVSEPEQQQRAGGWQTIAGLGVNWGSLASHPVDPPIVVNMLTDNGINKVKLFDADSWTVKAFAGTDIEVMLGIPNDQLNRFARSFDDAKDGVKHNVSKHLDKGGVNINHCSHCCWTLMGPFTLPIIAEASSISSPDACTKRTQNLSLRKSFASVSMGEERPFDFLRTLFEGLVAGGTAGVVVETALYPIDTIKTRLQAARGGEKLVFKGLYSGLAGNLAGVLPASALFVGVYEPVKQTLTRIFPENLSALAHFTAGAIGGIAASLIRVPTEVVKQRIQTGQFTSPVIAVRYISSVEGLKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYMLAARRNLNDPENAIVGAFAGALTGAITTPLDVIKTRLMVQGTANRYKGIVDCVQTVIKEEGPQAFLKGIGPRVLWIGIGGSIFFGVLEGTKRILAERRPNPPQPSDSKLQ 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0226 635 ProSiteProfiles small GTPase Ras family profile. 6 265 IPR001806 GO:0003924|GO:0005525
Lele19g0226 635 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 335 625 - -
Lele19g0226 635 Gene3D - 3 190 IPR027417 -
Lele19g0226 635 SUPERFAMILY (Trans)glycosidases 214 295 IPR017853 -
Lele19g0226 635 SMART rho_sub_3 13 181 IPR001806 GO:0003924|GO:0005525
Lele19g0226 635 TIGRFAM small_GTP: small GTP-binding protein domain 11 171 IPR005225 GO:0005525
Lele19g0226 635 SUPERFAMILY Mitochondrial carrier 363 613 IPR023395 -
Lele19g0226 635 SMART ras_sub_4 8 181 - -
Lele19g0226 635 PRINTS Transforming protein P21 ras signature 52 74 - -
Lele19g0226 635 PRINTS Transforming protein P21 ras signature 118 131 - -
Lele19g0226 635 PRINTS Transforming protein P21 ras signature 156 178 - -
Lele19g0226 635 PRINTS Transforming protein P21 ras signature 34 50 - -
Lele19g0226 635 PRINTS Transforming protein P21 ras signature 11 32 - -
Lele19g0226 635 Pfam Ras family 12 178 IPR001806 GO:0003924|GO:0005525
Lele19g0226 635 ProSiteProfiles Solute carrier (Solcar) repeat profile. 441 523 IPR018108 -
Lele19g0226 635 FunFam Ras-related protein Rab7 3 191 - -
Lele19g0226 635 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 364 630 - -
Lele19g0226 635 ProSiteProfiles Solute carrier (Solcar) repeat profile. 532 618 IPR018108 -
Lele19g0226 635 ProSiteProfiles small GTPase Rho family profile. 3 178 - -
Lele19g0226 635 ProSiteProfiles Solute carrier (Solcar) repeat profile. 360 432 IPR018108 -
Lele19g0226 635 Gene3D Mitochondrial carrier domain 363 628 IPR023395 -
Lele19g0226 635 SMART ran_sub_2 16 230 - -
Lele19g0226 635 Pfam Glycosyl hydrolases family 17 214 296 IPR000490 GO:0004553|GO:0005975
Lele19g0226 635 Pfam Mitochondrial carrier protein 536 621 IPR018108 -
Lele19g0226 635 Pfam Mitochondrial carrier protein 441 521 IPR018108 -
Lele19g0226 635 Pfam Mitochondrial carrier protein 362 434 IPR018108 -
Lele19g0226 635 ProSiteProfiles small GTPase Rab1 family profile. 5 223 - -
Lele19g0226 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 187 IPR027417 -
Lele19g0226 635 SMART rab_sub_5 11 181 - -
Lele19g0226 635 CDD Rab7 11 184 - -
Lele19g0226 635 Gene3D Glycosidases 214 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0226 Lele-ChrLele19 1355312 1366166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0226 449 625 Chloroplast and Mitochondria Gene Families AT1G07030 33.333 1.71e-15 76.3